RNA id: TCONS_00021173


Basic Information

Item Value
RNA id TCONS_00021173
length 7984
RNA type mRNA
GC content 0.46
exon number 39
gene id XLOC_010818
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31761825 ~ 31791165 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCCAAACGGGAAAATGTCGGGGAGTGAAGACGACCGGGACCGCTTTGAACCCATGGGAGACGATATCGAAGAACAAATATCAGAAACAGATACTCCCAAAtccaaaaagaagaagaaagcaAAGAAGAGTCGTGAAAGCAGGACTAGCAAACGACAGAAAGTCATCAGAGAGGAAATCGCTGTCAGCTCTCCTGAAGTCATGGAAGCAATTCGCATGGCTGAAGGTGAGGAAGAGGAGGACAGAGTGATGCGATCTGAGAGCGAAGGAAGTGACTACGCCCCgagcaagaaaaagaaaaagagatcCAGCTCATCCAAGGACAGGAAGAAAGGTTCAGCAGGAGAAAAGGCTGGTGGCTCTGGAGGAAAAAGCAAACGTAAGGAACCAGAGCCagaggaggaggatgatgatgacgatgatgatggaCAGGAGCCCAAATCTTCCTCTCAGCTATTAGCAGACTGGGGAATGAAAGACATCGACTACACCTTTACCCAGGAGGACTACAACTCTCTCACCAATTACAAAGCTTTCAGTCAGTTTGTCAGGCCTCTAATTGCTGCTAAGAACCCTAAGATCGCTGTGTCAAAGATGATGATGGTTTTGGGAGCTAAGTGGCGGGAGTTCAGCACTAATAATCCAATGCGAGGCTCAGCGAGTGCCAATGCAGCCCTGGCAGCTGCCAATGTAGCTGCTGCAGTGGAAAGTATGGTGACCAAGGTGgatgcaggaggaggaggaggaccgGCATTAGCCACAGCCCCGCCCACGACAACAGCAGCTCCTGTCGCTGCCCCACCCCCACCCCAGCAGCCCCCAGCAGTCCCACTGCGGAAAGCCAAGACCAAAGAGggcaaagGCCCAAATGCACGTAGAAAGACCAAGCCTACCCCAAAGCCCCAGGACAAAAAGTCTAAAGCAAAGAAAGTGGCACCCCTCAAGATTAAACTGGGCAATTTTAAGAGAAAGCGTTCATCTAGCGGTGAGGAGGATGATGGCGAGAGCGATTTTGACAGTTTTTCTGTAAGCGATGGATCCAACAGTCGAAGCAGCCGCTCCAAGAATAAGAAGGCCAAGAGCtccaaaaagaagaagaaaaTGGATGAGGATGCTGACGGCTATGAAACAGATCATCAGGATTACTGTGAGGTTTGCCAGCAGGGCGGTGAGATCATTCTGTGTGACACCTGTCCCAGAGCCTATCACATGGTCTGTCTGGATCCTGACATGGAGAGGGCACCAGAGGGTACCTGGAGCTGCCCCCACTGCGAGAAGGAGGGCATTCAATGGGAGGCCCGCGAGGAGAGTTCTGAGGGCGAGGAGGAGAACGATGATGGAAGGAGGGATGATGGAGATGTGGAGGAGGAGGACGATCACCATATGGAGTTTTGCCGTGTGTGCAAGGATGGAGGAGAGCTGCTTTGCTGTGACACATGTCCCTCGTCCTACCACTTGCACTGTCTCAATCCGCCCCTGCCAGACATCCCCAATGGAGAGTGGATTTGCCCACGCTGCCTGAGTCCTCCACTGAAGGGCAAAGTCCAGAAAGTTCTGACCTGGCGCTGGGGTGAAGCACCTCCACCCATGCCCGTGCCCCGCCCTGCAGACCTTCCAGCTGAGGCTCCAGATCCTCCCCCTATGATTGGTCGGAAGGAGAGAGAGTTCTTTGTAAAGTGGTGCAACAAGTCATATTGGCACTGTTCTTGGGTCCAAGAATTACAGTTGGAGCTGAACTGTCAGGTAATGTTCCGTAACTACCAGCGAAAGACAGATATGGAGGAGCCCCCCAATCTAGAGATGGGTGCTGAGGGAGACGAGGATAAGAGCTGTAAAAGGAAGAATAAAGATCCCTTCTATGCCCGTATGGAGGACAAGTATGGACGCTTTGGCGTAAAGATAGAGTGGCTCTTCATTCACCGCATCTTAAATCACAGTGTGGATAAAAAGAACAATGTTCACTATCTGATCAAATGGAGAGATCTGCCGTATGATCAGTCAACCTGGGAGTCCGAAGACATGGATGTACCAGACTTTGAAACATACAAGCAACATTACTGGAACCACAGGGAGCTGATGCTCGGAGAAGAGGGCAGACCAGGTAAAAAGATGAAGAAGGTGAAAGTGAGGAAGACGGAGAGGCCTCCTGCCAATCCTGTGGTTGATCCCACTATAAAGTTTGACAGGCAGCCGGATTATCTGGACTCCACCGGCGGTACGCTTCACCCATACCAGCTGGAGGGTTTGAACTGGCTGCGTTTTTCTTGGGCTCAGGGCACAGACACCATTTTGGCAGATGAAATGGGTCTTGGAAAGACCGTTCAGACGGCTGTCTTCCTCTACTCTCTTTACAAAGAGGGTCACTCGAAGGGTCCGTTCCTGGTCAGTGCACCCCTGTCCACCATTATTAACTGGGAGAGGGAGTTCGAGATGTGGGCTCCTGACATGTACGTGGTCACTTATGTGGGTGATAAAGACAGCAGAGCGGTCATACGAGAGAATGAATTCACCTTTGAGGACAATGCCATCCGCGGTGGGAAGAAAGCCTCCAAAATGAAGAAAGAGGCTGCTGTGAAGTTTCATGTGCTGCTGACATCCTATGAGCTCATCACCATCGATCAAGCCATCCTGGGCTCTATTGACTGGGCCTGTCTTGTGGTAGATGAAGCACACAGACTGAAAAATAACCAGTCAAAGTTCTTCCGTGTGTTGAATAACTACCCTCTTCAGCATAAGCTGCTGTTGACCGGCACACCTTTACAGAACAACTTGGAGGAGCTCTTCCATCTGCTCAACTTTCTCACACCTGAGAGGTTCAATAATCTGGAAGGTTTCCTGGAAGAGTTTGCTGACATTGCTAAAGAGGACCAAATTAAGAAACTGCATGACATGTTGGGTCCACACATGCTTCGAAGACTCAAAGCAGATGTCTTCAAGCACATGCCCTCAAAAACTGAACTCATCGTGCGTGTGGAGCTCAGTCCCATGCAGAAGAAGTACTATAAGTACATCCTGACACGCAACTTTGAAGCTCTGAACACCCGTGGTGGAGGAAATCAGGTGTCTCTGCTCAATGTGGTTATGGACCTGAAGAAGTGCTGTAACCACCCCTACCTCTTTCCCACAGCTGCTACTGAAGCTCCTAAAATGCCCAATGGCATGTATGATGGCAGTGCCCTCACAAAGGCTTCTGGGAAACTGATGCTTCTGTTTAAGATGCTGAAAAAACTGAAGGAGGGCGGACACAGAGTTCTTATATTCTCACAGATGACAAAAATGTTGGATCTGCTGGAAGACTTTTTGGAGAATGAAGGATACAAGTATGAAAGAATAGATGGAGGAGTGACTGGAGGAATGAGACAAGAAGCCATTGACCGATTTAATGCTCCTGGTGCTCCCCAGTTTGTCTTTCTCCTGTCTACCAGAGCAGGAGGTTTGGGTATCAATTTGGCAACTGCTGACACTGTCATCATCTACGACTCTGACTGGAACCCGCATAATGACATCCAGGCATTTAGCAGGGCACATCGTATTGGTCAGAACAAGAAGGTGATGATCTATCGATTTGTCACTAAAGCGTCTGTAGAGGAGAGAATTACACAGgtggCAAAGAAGAAGATGATGTTGACCCATCTGGTGGTGCGACCTGGTCTGGGCTCCAAGGCAGGATCCATGTCCAAACAAGAGTTGGATGACATCTTGAAGTTTGGCACAGAGCAGCTTTTCAAAGACGAACTTGGAGAGGGTGACAATAAAGAAGAAGACAGCAGTGTTATTCACTATGATGACAAGGCGATTGATCGCTTGTTGGATCGAAACCAAGACGCAACGGAGGACACAGAACTGCAGAGTATGAATGAATACTTGAGCTCATTTAAAGTGGCCCAATATGTGGTCAAAGATGAAGATGAGGAGGAGGAGGATGTGGATAGAGAGATCATTAAGCAGGAGGAGAGTGTAGATCCTGATTACTGGGAGAAACTGCTGCGGCATCATTACGAGCAGCAGCAGGAAGATCTCGCTCGTCATCTGGGCAAAGGCAAACGGCCACGCAAACCTGTTAACTACAATGACTGTTCACAGGAGGACAGAGGTAGTAGACGGGACTGGCAGGATGATCAGTCTGATAACCAATCAGATTACTCTGTGGCTTCAGAAGAGGGTGATGAGGACTTTGATGAACGATCTGAAGCCGCTAACTCTCGAAGACCAAGTCGCAAAGGCTTGAGGAATGACAAAGACAAACCCCTGCCTCCCCTACTGGCCAGAGTGGGAGGAAACATCGAGGTGCTGGGCTTCAATGCACGACAGAGGAAGGCCTTCCTAAATGCAGTGATGCGTTACGGGATGCCACCTCAGGATGCTTTCACCACCCAGTGGCTCGTTAGAGACCTACGAGGCAAATCAGAGAAAGAGTTCAAGGCATACGTGTCCCTCTTTATGCGTCATCTGTGTGAACCAGGCGCTGATGGAGCAGAAACATTTGCTGATGGCGTTCCTCGTGAAGGACTGTCACGACAACACGTTCTCACACGCATTGGTGTCATGTCACTTATTCGCAAGAAGGTTCAGGAGTTTGAGCATGTCAACGGTCAGTGGTCAATGCCCTGGATGAAAGAACTGGAGGAAAGCAAGAGGGCAGCGGCCATTGCAGCTGGAGAAGATCCCAAAACGCCCTCTACTGGGACGCCTGCAGATACACAGCCTAACACACCAGCACCTGAAGATCTTTCCAAGACCGAGGACATTAAAGAGCTGGAGGAGAAGACTGAGGGAGACGGAGAGAAGGAGGTGAAAGGCTCCAGACAGGAAGATGAAatcATTGAGATTCCAGACGAAGGTGAGAAATCCCCCAGTTCTGCAAAAAAAGAGGAGAAAACGGATAAAGAAAGCGAAGCCTCTTCAGAAAAGGATGGAGGGAGCAGAGAAAATGAAAAAGACGGAGAGAAAGAGAAATCTGCGGAATCAAAGGAGAACATGTCTTCAGATGTCAAAGCTGATGGTTCAGATGCCACAAACAGTGGAGATTCAACAAAAACCAAAGAAGAGTCTTCTGAAGAAAAAATGGACACTAGCCCAGCCAGCGATGAAAAGAAAGAACTGAAAGATGAGAAGGACGGAGTGAAACCCGAGGACTCTGCAAAGCTGCAGAATGGAGAGAATGCCAAAGAGACAAGCGGAGGAGGGGATGGAGTGAGTGAGGAGAAAAAGAAAGCAGTGAAGCAGAGGTTCATGTTTAACATCGCTGATGGAGGTTTCACAGAGCTGCACTCACTCTGGCAGAATGAAGAGAGAGCCGCTACAGTCACCAAGAAGACTTATGAGATCTGGCATCGTCGCCATGACTACTGGCTCCTGGCTGGGATCATATTCCATGGTTATGCCCGCTGGCAGGATGTGCAGAATGACCCGAGGTTCGCCATCCTCAATGAACCGTTTAAAGGAGAAATGAGCAGAGGGAACTTCCTCGAGATTAAAAACAAGTTCCTTGCTCGCAGGTTTAAGCTGTTGGAACAGGCTCTGGTGATTGAGGAGCAGCTCAGACGTGCTGCGTATTTAAACATGACTGAAGATCCTTCTCACCCCTCAATGGCACTGAACACGCGCTTCAGTGAGGTGGAGTGTCTGGCAGAGTCACACCAGCATCTCAGCAAGGAGTCTATGTCAGGAAACAAGCCTGCTAATGCAGTTCTACACAAAGTTCTCAAACAACTGGAGGAGCTTCTCAGCGACATGAAGGCAGATGTGACTCGACTGCCAGCAACCATCGCTCGAATACCACCCGTCGCTGTGCGGCTGCAGATGTCAGAAAGAAGCATCCTTAGCCGGCTGGCCAGCAGAGGACCCGAGGTCACGCAGACGCAGGCGCAACGCTGATGACCCACCCGTACCTCACATTAATCACCATGAGGATTCATCTCACACATATAGACGTGCACCTGGCTCAGGTGATCAGATGCGTTGTATATATCTGAAATAAGTTCAAGCTGCCCGCATTTAGTATGGACCGAATGAGAGTGGAGCGGTTCTTTGCTAACACACTGTGGTAACCTTACTTTTCCCGTAAAACTCGATTTAGAGTCATTCCACCCTTTTCTGTTAAAATATCTtgtgaacacacacagacacacacacttgctgACTAGAAAGATGCAAACATATTTCACTCAAATTATTCTCCATAGAAGTCCAGTTCAGGTTTTCCAGGTCACCCACTCTGCAGTGTAGACGTAAAAGCAGGGCTATGTTGAAGAGCTGATGTGGATTTATTGCCTTGCATGGATAGGATTTTGCAGTGAGGATGTTTTTTCCTCAGGTGTGTATTATGTTGTAATTCACACTAGTTAAATCACTGCTTGTTTTTTGTGCATTTCCACAATCATGTTCCAAGCTTGAATTTCAGATGTGTTTTTGAATCTTGAACCTGAAATCATGTGGTTTCATTCTTGTACTACTGCAAGTACCATCAAGCAGATGTTGAAAGTTGAGTGAAAGGTATATGCTGATGTAAATGCAGATCCCCGTCCCAAATGCCACCATGAGACATGGTTGACATGTGAGTACAGATAGACTGTAAGGTAATAGTCCACTGACGCATCTTCTCCAAAAATAAGGAACACAAAATCACTCTTTATGaatcaaaaatgtcaaatagaacaCCCTATAGTCTTTGGAACTTCACAGATGTGTTTTGGACAGGGCCACAGCTCATGTAAGGCCATGAAATGACCTTTCATTCCTTtagatttaaaatgatatatattaTAATGAAGTTTTTTCCAGAACCGCTGCTTTAAAAAGAGTTGAGTTCTATGTTCACCATTGTTTATTAATTCCGTGCTTGTAAAGATGTCCCATCGCCTCTCCTAAACTGCTCCTGGGTAATGTAATTGGAGATTGTGCCACGGTTTCTTCTTCCTATAAGACAAATCCCGCTAGCACAGGTGAAAACAAATACAGCTGTTAATTTAACGTCTAATTTTACACTTTCGGAAGTTTTGAATATCTCACTTTGTAATTATCGTTGTTACCCTGTTATTGTTGTCTTATGTTcctgttttcttttttcagaccTGCAATAAAAAGGTAACAAAGTATGGTTTGATTGATTCTTTGTTTAGGTGTTggctgctttaatttttttagatttattatttttttttatataaatagtgGGTGTCCAAACATATTTTAGGCTTGGTGCAAAGCTAAGTTTAGTAGAGGTTTTGCTGAAATATGACATTGATTCataataaacattgtaaaattaGCATAAATCTTTGAACTGAATAAACTGCAGCCTTACAAATAGTTTATTCTTGATGTTTTGAATACACTTAAACCATTTAGCCATGCTtaagtgtattaaaaaaataaagttgaccacaaaatgaaaatgtcctcaccctcaagtggttccatatCTCCAGAATTAAAAAAGGGTTGCCATTGACATTCAAAGGAGGAGGAATTAAGCAGCTGGAAGTCAACAGCTACCAGTTTAACAGAATAACTCAAATGAGTTTGAAACTAATGGAGTgcgagtaaaagatgacagaattttcacttttgggagAACTATTTCAATGTTCAACAATAGAGTAAATCAACTCCACATACTCGTGTTTTTAGACGCGTACTTCAGATTTAATAGTGTGGATATACAGTGTAAAAAATTGTGTAGAAATGGTTtgaattaattcaataaaaaaattttacgcaattttatttattttttaattttatttttcagttcagTCTTGCATGGTTTGCATATTTGGGGGTGCGTCGCGTGTGTATGTTGCTTGTCGCATCACAAATTTTGGAAGGGTGCAAAAACTTGTTTACTGGAGATCCAGTCGGTTTTATATTTGGTTTGTAGCTCAAAATGATTCGCTCTTACCTAAGATATATAAACTTTAGTCAGGTAAATCACGATTTATGAACTTGCACCTCAAGAAAATTTGGTCtcaaaacaactaat

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4532 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Is expressed in blastomere and central nervous system. Orthologous to human CHD4 (chromodomain helicase DNA binding protein 4).

Ensembl:

ensembl_id ENSDART00000184655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021810 lncRNA downstream 694 31760113 ~ 31761131 (-) True XLOC_010817
TCONS_00021161 lncRNA downstream 133668 31626494 ~ 31628157 (-) True XLOC_010809
TCONS_00021153 lncRNA downstream 250118 31508827 ~ 31511707 (-) True XLOC_010805
TCONS_00021141 lncRNA downstream 354139 31385083 ~ 31407686 (-) True XLOC_010802
TCONS_00022180 lncRNA downstream 517144 31243780 ~ 31244681 (-) True XLOC_010800
TCONS_00021176 lncRNA upstream 88400 31878685 ~ 31881623 (-) True XLOC_010820
TCONS_00021811 lncRNA upstream 91863 31882148 ~ 31892032 (-) True XLOC_010821
TCONS_00021190 lncRNA upstream 218953 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA upstream 220323 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021193 lncRNA upstream 237794 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00021171 mRNA downstream 4862 31720042 ~ 31756963 (-) False XLOC_010816
TCONS_00021170 mRNA downstream 4862 31720042 ~ 31756963 (-) False XLOC_010816
TCONS_00021172 mRNA downstream 4966 31736486 ~ 31756859 (-) True XLOC_010816
TCONS_00021169 mRNA downstream 7723 31720042 ~ 31754102 (-) False XLOC_010816
TCONS_00021168 mRNA downstream 43812 31706841 ~ 31718013 (-) True XLOC_010815
TCONS_00021175 mRNA upstream 24959 31815244 ~ 31824525 (-) True XLOC_010819
TCONS_00021177 mRNA upstream 109842 31900127 ~ 31919568 (-) False XLOC_010822
TCONS_00021179 mRNA upstream 134649 31924934 ~ 31933740 (-) True XLOC_010823
TCONS_00021180 mRNA upstream 175055 31965340 ~ 31974482 (-) False XLOC_010824
TCONS_00021181 mRNA upstream 178088 31968373 ~ 31976269 (-) True XLOC_010824
TCONS_00021163 other downstream 110642 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021159 other downstream 133138 31623975 ~ 31628687 (-) False XLOC_010809
TCONS_00021160 other downstream 133641 31626002 ~ 31628184 (-) False XLOC_010809
TCONS_00021143 other downstream 326805 31432847 ~ 31435020 (-) False XLOC_010803
TCONS_00021122 other downstream 973280 30772319 ~ 30788545 (-) True XLOC_010792
TCONS_00021178 other upstream 115571 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021196 other upstream 326386 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021197 other upstream 361914 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021200 other upstream 409167 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021209 other upstream 783825 32574110 ~ 32574236 (-) True XLOC_010842

Expression Profile

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