RNA id: TCONS_00021811


Basic Information

Item Value
RNA id TCONS_00021811
length 5603
lncRNA type inter_gene
GC content 0.33
exon number 8
gene id XLOC_010821
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31882148 ~ 31892032 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaggcctATATAAGCGACctgctttatttaccaaacaaATGAAGTTTATTATCTTGATCCTTAAATAGCCTACATTTTGAAGTATATGTTTGGTATAAGTTAAAGTTTAAATTTAATCTCCTCATTATAGGGTTTTTAAGACTTTAACCAGAACTATATGTTGTCGTTGTCTGACATCTACAGGGTATCAATGGTATTAAAATAAAGGAGGGCTCTAAATCCTGTCTATCATGTGACTTCTTTTAATCGAAATCAAAAGGAGGCGTTATTTGTGTGAAGTAGTAGTGTGAAGTAGTAGCAGCGGATCAAGAGACGCAGCCTAATAGTCTACACATCATTCTTCTTCTAAAATAATGAACTAATGGATTAGTCGCCGTTAAACGAAAAAGAAGAAGACAGATCCGTCATTAACCATAGTCTTATTCGCCCCTGCTGTGTGTGATGTTCATCCTGAAACGTGCGCGCGCGCGAGTTTGTGGGTCTGCTGCGTATCTCATCTGATGATCCAAAAAGAGTTTGGAAGAAAGTTGTAGTTTAAGTCGTTATCGCTCTATGACATTTCCACACGTTGGATATTATGGACATCGTAATGAAAATACTGTGGGGCATTTGGATTTTCTCACCTAAGGCATATGGCTCAAATCTGACCTGTTGTTTTGAGACCCATTTGGCAAACCACTCAGTTTCTTATCATCTCAGCAGGCCACGTGGATCCGGCTGCACAAGAATATGGTCAGAAAAGGAAATTAATATTGTTGATGAAAATGACGATGTAGATGAGAAGAAAGTTGTATTTCTTGGACCCGAGAAGTTAATTCTAAGAAACCCGAATGAAGAGATCGGAAATCTCACATACAGAGAGGACTgtctaaacactgggAAAGGTTACACTGCAAAATGTAATGATCCGTGTCCTGCTTTCGTTGTGTCGTCCACTGCTCCAGCTGATAGAGATCAGAGTATCAAGTATGATATTGGCCTGATCATCATCCTCATTGTTGTCATCATCACCACCCCCATCATAGTCATCATCTGTTACAGAAAACGCAAGTGTCCAGCTTTAAATCTTCCTTTcagGTGCAGTTGGAGAGCAGTGGCACTTAATGAAACTGTCCTGGGTATTAATCCTtgaattaaattgatttaatgaatttaaattaaacGTATTAAAGCTGTGGAagctaataatagtaataataatgatacacattttttatataataccaattttatatatgttttaatatttttataaatatcatattgtgtgtgtatatatataagacCATATACATAGAGTCccttataaaggtttgaaacagaGGCAAATTCCTTTATTTTGCCTGTAGGCTTAAAACATTTGGATTTGATATCAAAAATGAGTAACGATTaacattttagcttttattttcatGTCTTTACATCGAGATCTGATAGACAACTtcctagatcagtgtttctcaaccacgttcctgtaggaccaccaacactgcatgttttggatgtctcctttgtttgTCACACCCATTAAAGGTATCTCAGTCTCAGCtaataagctgatgatctgaatcaggtgtgtttggttaagaagacatagaaaatgtgcagagctggtggaaCGTGCGAACTTGGTCTTTGATGACGCCTTTTATTTAAACCCACCCATTTTTCATGTGAGCAAAAGTATTAAAGCATATGACTTAGGGCAGGTGTGGTTTGTTACCCAGAAATGTCCTATTACACTGATGATTCAAACAATAGATTGCACTAAAAGTCTAAACTCAGTTAATGATTTGTGCTTTACCGGTTTATACTGCATTAATACTTCGTATAACCAGAATGAAAACTAAAGAATTTTCTATGGGTGAAAAATAAGCCATTGTGAATCTGAGAAAAGATGAAAAATCCATTAGAGCCATCACACAAACATTGACTATAGCCAGAACAACCACTGGAATATCCTAGAGAAGAAAGAAACCACCGGTATAGTAAATAACAGACGTGCCCATATAAAGACCCCTAAAACATCAGCGAGGGACAACAGCAACAGCCTTTAGCTTTTCCATCAATTTGGTAAAGTTTGAAGAAAGAAAAGATTTGCTCAAGATCCCAAACATATCTGTAAAACATGGTGGAGGTAATATTATGGTGTGGGATGGGTTCTTCTGGGATGAGCTGATTAATCTTCATTGATGATGTAGCTCATTTTGCCAGCAGCAAGATGAACTTAGAAGTCTACAGaaacatttttctaatttaaGGAAAGGTGCACCCAAGCGGATTGGGAGATCCTTCTGTAATTCACTGCCAAAACAACAAAAGAGTTCGTCAGGGGAAAAAGTGGAAAGTTTTAGACTCTCCAAGTCAAACTCCACATGCATTTCACACTCTAAAGAGAAGAATAAAGGGAGTAACCCCTCAAAACAAGCAACAACTGAAACAGGATGCAGTGAAAGCCTGGAAAAACATCACTAAAGAAGAATGCATAAGTTTGGTGATGTCAGTGGTCACGGGCTGAAACAGTTATTGCAAGGAAAGGATTTGCAGCTAAAAGTCTTTCGCTTCTAATACTTTTGCTCATATGAAAATGGGTTTAAAATAAAAGGTGTTattttctaagttgtgtgtcagatccatatgtacagttgaagtcagaattattagcccccctgtacatttttctcagatttttgtttaacagagagaagatttttttttttcaacacatttctaaacataatagttttagtacctaatttctaataactggtttattttatctttgccatgatgacagtacataatttttttactagttatttttcaagacacttctatacagcttgaagtgacatttacaagcttaactaggttaattaggttaacttggcagatTAGGGTAaacaggcaagttattgtataataattgtttgttctgtagactatcaaaaagaatataacttaaaggggatagtaatgttgaccttaaaaatggatttaaaaaaattaaaaactgctttggttttagctggaataaaacaaataaaactttctcttgaagaaaaaatattatcggacatactgtgaaaatttccttgctctgttaaacataatttgggaaatataaaaaaaaaaaacgttcaaaggggggctgataattctgacttcaactgtaaattcctaaaataaaagcaaaaatgaatCTTTGATCACGTTCACCGTTATATATCAAACCCAAATGTTGTCCATttacagccaaaataaaagaattgGTCTGAAGTGTTTTGGAGtggactgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacatgtatatacatatacagtatatacgtGAATATTAGAATAATACagtttgctatttatttatttattatattatataattatattatgtaatagcatattacatattataatataaagtCTATACTTTCATTTATTATTCAACACATTCTCACGATAATTCATAACtatttgatttaatggctaattcctatgaattcatacaatctcattcatataatttattatgatttgcttatcccccaatgatggttggatttaggggtgggcttaggtgccacgcctcttgccctcatttgtaagttgctttggataagtgtctgctaaattagaaaatgtacatataaatatacttatAATTTATATCACAACGCACAGTTTGGAACCCGCACATGACCTGCAGATTAGTAATGTATTTGTTCttggttaatccaacatttataacaattacaGAAAGATTGCCTCCAGCGTCATTCAAATTACGTATATGAAAGCAATtcggcttccctgtaaaatatgatgacaaaaaaaatttgTTGTGGGACCTACAGTAAATGCTTTAggttttttagaggtgttttctgtcactgtttgtttaacctgcattaatgcatttagtgtaaagctgcacaattaaacattaaaagattgtgatctcaattcaaatccgcacaacatgaatgataaataataatgatttgcatatgCTTATTAATCTTTCAaagcgctgcattcaaatctgcgttTATTCGAGACAGATTCAGTTTTCACAGttttcagttagttacaaacaattacataacacagaagtactttaacagtttatagttcaaatataaacactgatgtttatgataAAGATTCAAATCCCTGTTTAACGGAACTTGACAAATGTTGtgtgtagcaattacattgtgtcACCAATGGGAGGCCACAAACAACCATccaaattatgtcactgaataggttttcaaaaatgattcacctataatgaaacatgaagttttatgtgtgaattgttgaatgattattgaaaataaatatgttgtaAAGATATAAatatgttagatttctatatttagcgttatcagctatagtagcaaagatcattttttgtattaaatgttttctttatttcagCTGGTTCTTCcctgatttttatttgtattaaaatgacAGCTTTTAAGTTATGTTGGTTTttgcaataatatttttgtattaatggaaagcaaattacatttatcTCCTTTTTTACTATTACGAAAAATAGTCTGATCCATGACTCAAAAACCGTTGTGTGATTCGAACcttgagatttgtgatccgttacaccactaataaCTGTAAAGTTGTACACACTGTTAAACTGAATAAGTTAAGTTCAACCCAAACTATCTGATTGTcttaaaccatttaagtttacaAACTAATATTTGTGAATACTACttgtttgagtttatttaatataacattaaaaatataattttttgacaCAGGCCAATGTTGTGCAAACAAAGGCCATTTATTCTTAATATTCCATCAGTTAAGACTGTTTTAACATTTACTCTCATTTAGCAAACACAAGCTGTTGATACAAGCTCTGCATAATCTGAATCTGCTTTTTATTACACATTATTTGCTTGTTAAAATTgattacaaaataaatttttgcaaaaaaaaagttgttcatGTTTTCTCATTTCAAACCTTTTTTTGGTATAGTGGAGTTGTAACAACATATATGACAGGAATATTCAAGGTAATTGCAACTCTTCATTACATAAGAGAGATTCAACTCCCAGTACCAGGATTTTGACATGGGGAGAGGCAATGAACAGCGCCGTTTCCTACTTTTGATACCCAACTGGGAGGTACTTTTGAGTGCttgcagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcgtgcacgtgtgtgtgcgtgcgtgtgtgtgtgtgtgcttatcacTCAATACAGtgcatataatttttataatttttgacaCAGGCCAATGTTGTGCAAACAAAGGCCATTTATTCTTAATATTCCATCAGTTAAGACTGTTTTAACATTTACTCTCATTTAGCAAACACAAGCTGTTGATACAAGCTCTGCATAATCTGAATCTGCTTTTTATTAC

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0150063 visual system development biological_process
GO:0043292 contractile fiber cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0044297 cell body cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021176 lncRNA downstream 525 31878685 ~ 31881623 (-) True XLOC_010820
TCONS_00021810 lncRNA downstream 121017 31760113 ~ 31761131 (-) True XLOC_010817
TCONS_00021161 lncRNA downstream 253991 31626494 ~ 31628157 (-) True XLOC_010809
TCONS_00021153 lncRNA downstream 370441 31508827 ~ 31511707 (-) True XLOC_010805
TCONS_00021141 lncRNA downstream 474462 31385083 ~ 31407686 (-) True XLOC_010802
TCONS_00021190 lncRNA upstream 117206 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA upstream 118576 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021193 lncRNA upstream 136047 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00022181 lncRNA upstream 151357 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021206 lncRNA upstream 395764 32287796 ~ 32289736 (-) False XLOC_010837
TCONS_00021175 mRNA downstream 57623 31815244 ~ 31824525 (-) True XLOC_010819
TCONS_00021174 mRNA downstream 90983 31762712 ~ 31791165 (-) True XLOC_010818
TCONS_00021173 mRNA downstream 91863 31761825 ~ 31790285 (-) False XLOC_010818
TCONS_00021170 mRNA downstream 125185 31720042 ~ 31756963 (-) False XLOC_010816
TCONS_00021177 mRNA upstream 8095 31900127 ~ 31919568 (-) False XLOC_010822
TCONS_00021179 mRNA upstream 32902 31924934 ~ 31933740 (-) True XLOC_010823
TCONS_00021180 mRNA upstream 73308 31965340 ~ 31974482 (-) False XLOC_010824
TCONS_00021181 mRNA upstream 76341 31968373 ~ 31976269 (-) True XLOC_010824
TCONS_00021182 mRNA upstream 85661 31977693 ~ 31980948 (-) True XLOC_010825
TCONS_00021163 other downstream 230965 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021159 other downstream 253461 31623975 ~ 31628687 (-) False XLOC_010809
TCONS_00021160 other downstream 253964 31626002 ~ 31628184 (-) False XLOC_010809
TCONS_00021143 other downstream 447128 31432847 ~ 31435020 (-) False XLOC_010803
TCONS_00021122 other downstream 1093603 30772319 ~ 30788545 (-) True XLOC_010792
TCONS_00021178 other upstream 13824 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021196 other upstream 224639 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021197 other upstream 260167 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021200 other upstream 307420 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021209 other upstream 682078 32574110 ~ 32574236 (-) True XLOC_010842

Expression Profile

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