RNA id: TCONS_00021180


Basic Information

Item Value
RNA id TCONS_00021180
length 4971
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_010824
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31965340 ~ 31976269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGGCGGCCTCTTCCAGCGCTGCATCTTCTGAATGTGAGGCTGGAGATGCGCTGTGTGAAATTCGTGTGTATGAACAAGAGGTGATAATCGTACCGGTGATCTTCTTCATGATGTTCTTGATCACGCTGCTATTCATTATGCTGCTGAGGTTCTGTCCAGAGAAGGTGGAACGCCTGCAACCTGCTTCCAGTCGAGTATCCAGGACTAGGAGAAACTTGCAGGGCATTGATGCTCCTCTGGGTCTGAATGCTCTGGAAGGGGAGCCCATAGCACTGGACACAACCACTTACATGACATTCAACCCTGCAACGCCAGCCAGGCTCGATCACGCCAACAATGTTGCCTTTACTGATGGCATGTTTGGCGCCACAGCTTCAGCCTTTGCAAAGCCACGAGAACTTCCACGCCAGCGACTGCCGGAGAACTTTAACGGAGTCGCTCCTCTCCCAGCTTCATACTCACTGAAGTCAGACAGCCCCATCTCGCTCTATAGGGCTCGTATGGAAAACAGAAATGTGGTGCTTCGTGTGCTTAAAGATTCAGCCAGTAATCAGGAAAGTCAGTCATTCTTGGGATTTGCGGCCTTTCTGTCCCAGTTAGGGCCTCATCCCTTCTTACCAGAGCTGCTGGGAGTAATATCCTTGCGGGCTCCTCTCATTACTGTTATTGAGGAGATGGAGAACAGAGATCTGCTTGGATTCTTGTGGAGATGTAGACAGGATAATGTTGGACCAGATGGCATGTGTCAGATGACAGAGAAAAAAATCTTCAACATGGCTTCCCATGTGGCCTCAGCACTGGACTTTCTCCATGGCAAAGATCTTCACCACTGCAACTTAAAGGCTCGAAATGTGTTGGTCAGCAGGATTTGTACTGCAAAACTCTGGGGTTTAGACGACTTGTACGTGAGGACGTCAGGAAGTGGTAATTACAGTGAAGATCCTGGAAGAAAAAAGTGGCAAGCTCCTGAGCTACTGGCCAAGAGACCTTCTACTCCAAAAAGTGATATTTGGTCCTTTGGGCTGCTGCTGTATGAAATGGTGACACTTGGTGAAGTTCCTTTTGCCGAAATCCCTGTTAAAGAACTTCTACAGCATCATCAGAGGGTGAAACCAATAAGAAAACCAAACAACTGCTCAAACTCACTTTACTCAATTATCAAATCCTGCTGTCATTGGAAAGAGCAAGATCGGCCCTCATTGGCTGAAGTCAGGCGTAAACTCCAATCAGGAGAGAAGAGTGCCAGTGACAGCAGTGTTCTCCGTGTGCCCGAGCCAATCAATATTCAACAGTATCTGAAGGAGGCTGGATATGGAGAATCCAACAGCTACactgttttttaaaaaggataGCAGTCGTGAAGTAAAAGTTGTTGTGAGGCTGCTACatgatatatgaatatatgcTCTTGTTGAAATGTTCTGTTCACATTAATACACAATGTGTTTAATAGCTGACATTGTGTTGAAAAATTACATTGCAAGATGCTGTTCACAGAATCAGAGGGTTGCACCAAAACACATATTAAGCACCTCCTGATAAGTACACAGTCCTTGTATGAATTTGTTTAAAGCAAATGTTTGGTTAATGGCTCGTACGACTTTGTTTAAAATCTTTATGGAAAATGAATGGGAAAATACTTCTGGAACTTGCGCTGCTGAAAAACAGGATGGACGCTGTTTATGAAAACTCTCTTTTGTCCTTGTGGCTTTAAGCTGTGGATTTCCAGTGCCTTCTAAAGAGTCCTGACCAGccacatatatatttaaaaaaataacatatgaaatgcaaattttaaagtgtttacagATATTCTTTCTTTAAAATGCATTGAAATTGCAATGTTGCCAAATCCAgtgattttatttatatgatcaaatttttattgtaatgtaaaatttaacttaaaactttggaaaataaaagatttttgaaGTAAAATTGAGATCCATTTTTGACCATTTCAGCATTATTTGATAACACATGGCCGATATTTCTGGTTATatgaacaaaattaaataaaaaaattctgtttaaaCCTTGGATATTTTAAgcaaaatcacaaaaataaataaataacagggtccAATCATAGTTAAATAATTCAATTCTAGTTTTCTTACATTTAAGACATAATTGCTGTTGGGTAAGTTCCTTCAAAATGGTTAATGATTACTTATAacatcattaaaattgtatttaaattacattttaaattactttgtCAGAAAACTTAGTTACTCAacaagtaatttaattacttgactaaATACTAAAAATCCACATAAATCTCAATGCATAGACAGACACTAGAAATGAAACTTTTAATTACCTAAATTGGAGTCAAACAGGactgtttagttttgtttaaataaaaacttttcaagagttcacacttagctgatgactgattataaagtgtgtttggcgagagagagccctgagctcaaaagataaattcgttctggctattttccgaaaagagaagttgtaagattaccggtaatttgccggaatgctgcgctgtgtgaatgcagaggGAAGATTGCCGGatagagcgcgtgcacgtctagaacatgctgacgtgagacgtctactttagccaatcagaacagtcagaagcATTCACAtccggtttatgagaataaaagcctttgaatatcaAAATATTTGAGGAATTTCCCCCTCAGAAAGAGTTTGTGCCcccccccagtttttataaaggattgttcactcaaactgaaaattctttctgtcaatAATTATGAACACCCCCGTCGTTCCAACCTTCAgagcacacatttaaatatttaaaaatatatgaaatagcAATTGAATTATGAGAATGGCTATATCATGATGAACAGTgctttataataacaaaaataattccttacatttctatagcacttttcttggcactcaaagcgctttacacatagggggaatcttctcatctactttttctctttttttaatgcaagaaagaacattacaaagacataatatgaacaaagagacaaagagggttacataaatagatttccagcaaattaaacaagtttaaatgatttacaccaagaaagcgttttaaatgcagtgtaattGTTAGAGTCTTTTAAAGAGTTTACATAAATTTCAAAatcctttctgaaaataaaaaagtaagggtgtttccttgaaaatttacatttatggatgtaaaattttgttaaaaaaagcaataaatcaataatgaatttacaatgagaaggatctacactcagagagtaaccaaagaatacattttttggggaaatacagaagtttgaaaataagaattttttaatgaaattggaaaagtcaacccaaaacactttacagttcTCGCTATCCTGACAATTCTGACGGGCGAGTGCGAGTAAAAGGCaatttgtctcgttttacgcttgaacaactaaatgaatgccaaagtttatttaactgaatgtattttaattacattacaacacgaatgctgtaaaaggaaccgtatacaATGGAAAAAACGCACAATaaccggtcaccggaagtttataagtatatgggaacaacactagctcggcatatacttaattatattcatctgtctccacattctactgcatcccagaatattacacagcaccaaaaatgtaaaaaaaaatatacattgaatatatttaatatatttttgtgtacGGCAGACGGCAACTGGCCGTGACGCAGATTCCCGAGTCTATGTGCTCCAATCAGATGAGCCCTCTTAAGTGCTCGCCATGACAACGAGACagcagtgacgtgccttgtaaaaatttgcatctgcgctcctataaagctcgtgtgctctctaTCAGCGTTGTCAGTTTGCTCGGTGTagctgtttgtacttgaccaaggtgagttctataccgacggtacgagtggagccacgccaatctcacgaagtccgcttcgtgaagcttcactcgggcctgtctgtgctgtagttccttgtGGTTTGCGTACATAAACGTAACATCGCAAGgaatattacgtgtttgttgctcgaaatgtgccgccgagcaacatctattgaatactggcacggcctggcACCCGGTCTTCTCGTGCACTCCCTGGgacgaggcggcctttgagccctaggcaggggaAAAAACAACCCCCGAGGATcctcagggaaacacggggggccggtagtgggacctcgctgcgagggttatggtgggtgggagtagcgaggcccactcagcgtctattttaaactatagtttcaaactttagtttactatagctTGAAATAGacaccatggtaactgttatgatttaactttatgcaaagagcttagaatgaccaagagcaacagccccggattccgccattttgaagttaaagcgatcggccgtccattggatctcattgctgtcgcgatggaaagcagctgctttgtttttatttaatttattcaaaaagcgcgttattgtttcccaaattgtagagtgtcgcctcttggtgattctaggctctttgctctttttctgactgttgtaatgttttgctttgtgtttcaGCTAagctgttgagcaaagaaggactattgaagacaacagttgaagacaaccgcgggttatattcacgagtgCGCGCGTTATAATGTTTCCGGGTTGTTTTCTGAAAGTTTGTcttgtttgcatgtcaaactaaataaactatactctttctaaacacctgtctcgtgttttatttgtcctctacagcaatgcactgtcatgtaagtctgttgaatgcatttgtatgcaacatggtttgacaatacagtagtctaacaaataaatggttgttataaatgtaccttgattagtcaacatttggtgtaggtaataaaaagttaatcaaagatgtcctaagacataagggttatgttatggttgtttcataactatattattattctgtatgtttaaaaccagc

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3435 Predicted to enable signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human STYK1 (serine/threonine/tyrosine kinase 1).

Ensembl:

ensembl_id ENSDART00000189073

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021811 lncRNA downstream 73308 31882148 ~ 31892032 (-) True XLOC_010821
TCONS_00021176 lncRNA downstream 83717 31878685 ~ 31881623 (-) True XLOC_010820
TCONS_00021810 lncRNA downstream 204209 31760113 ~ 31761131 (-) True XLOC_010817
TCONS_00021161 lncRNA downstream 337183 31626494 ~ 31628157 (-) True XLOC_010809
TCONS_00021153 lncRNA downstream 453633 31508827 ~ 31511707 (-) True XLOC_010805
TCONS_00021190 lncRNA upstream 34756 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA upstream 36126 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021193 lncRNA upstream 53597 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00022181 lncRNA upstream 68907 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021206 lncRNA upstream 313314 32287796 ~ 32289736 (-) False XLOC_010837
TCONS_00021179 mRNA downstream 31600 31924934 ~ 31933740 (-) True XLOC_010823
TCONS_00021177 mRNA downstream 45772 31900127 ~ 31919568 (-) False XLOC_010822
TCONS_00021175 mRNA downstream 140815 31815244 ~ 31824525 (-) True XLOC_010819
TCONS_00021174 mRNA downstream 174175 31762712 ~ 31791165 (-) True XLOC_010818
TCONS_00021173 mRNA downstream 175055 31761825 ~ 31790285 (-) False XLOC_010818
TCONS_00021182 mRNA upstream 3211 31977693 ~ 31980948 (-) True XLOC_010825
TCONS_00021183 mRNA upstream 7601 31982083 ~ 31991377 (-) False XLOC_010826
TCONS_00021184 mRNA upstream 7667 31982149 ~ 32006737 (-) False XLOC_010826
TCONS_00021185 mRNA upstream 10161 31984643 ~ 31985965 (-) False XLOC_010826
TCONS_00021186 mRNA upstream 29283 32003765 ~ 32008277 (-) False XLOC_010826
TCONS_00021178 other downstream 50640 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021163 other downstream 314157 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021159 other downstream 336653 31623975 ~ 31628687 (-) False XLOC_010809
TCONS_00021160 other downstream 337156 31626002 ~ 31628184 (-) False XLOC_010809
TCONS_00021143 other downstream 530320 31432847 ~ 31435020 (-) False XLOC_010803
TCONS_00021196 other upstream 142189 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021197 other upstream 177717 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021200 other upstream 224970 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021209 other upstream 599628 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 655592 32630074 ~ 32649804 (-) False XLOC_010844

Expression Profile

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