RNA id: TCONS_00021193


Basic Information

Item Value
RNA id TCONS_00021193
length 541
lncRNA type antisense
GC content 0.50
exon number 3
gene id XLOC_010828
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32028079 ~ 32039063 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTAATTCTACAGCAATGTTCTAACAACTCTGACAAAAGCTGACTCACCTAATAATTATACAAAAGAAGCAGAAGAGGAAGTAGAAAGCTGCTGTCAACAGACTCATGTGCAGCGGCAGCTCGCGAAGGTTACGTGTTTCACTGGAGTCTTCAGCATCTTCAGGAGGAGGAGAAGCCCAGTCAAACTGAACTCCGCTGCTCTGCTGAGCAGGAGCCGGAGCCGCAACTGTCCGTAACCTCAGGGAATGGTGGGAGACATCGGGACTAGGGTAGTCTGATGGATATAGGCCGCCAAAGGTCGATCATCAGAAGTATCTGTACTGGGCCATCTACTTGTCTCCAGGTGTAACCCATCCTTGTGATGTCTGCCTCTGTTTCTTGGACGGCCTCTTCCGCTTCCCTTGGCGGTTCCATCTGAAAGCCTGTCTGGTGATGCTAGTTGGTGGTTTGCGTAATGTGTGCCCTATCCGACCCCATCTTCTCTTCCAGATTTCTGCTTCTATTGGACGTTGACAGGTCCTTCCACATAGGTCGGTGTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135966

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021190 lncRNA downstream 14580 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA downstream 14651 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021811 lncRNA downstream 136047 31882148 ~ 31892032 (-) True XLOC_010821
TCONS_00021176 lncRNA downstream 146456 31878685 ~ 31881623 (-) True XLOC_010820
TCONS_00021810 lncRNA downstream 266948 31760113 ~ 31761131 (-) True XLOC_010817
TCONS_00022181 lncRNA upstream 4326 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021206 lncRNA upstream 248733 32287796 ~ 32289736 (-) False XLOC_010837
TCONS_00022182 lncRNA upstream 309710 32348773 ~ 32363571 (-) False XLOC_010838
TCONS_00022183 lncRNA upstream 309710 32348773 ~ 32378676 (-) True XLOC_010838
TCONS_00021813 lncRNA upstream 348513 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00021191 mRNA downstream 14150 32009722 ~ 32013929 (-) False XLOC_010827
TCONS_00021189 mRNA downstream 14166 32009203 ~ 32013913 (-) False XLOC_010827
TCONS_00021188 mRNA downstream 19798 32003902 ~ 32008281 (-) True XLOC_010826
TCONS_00021186 mRNA downstream 19802 32003765 ~ 32008277 (-) False XLOC_010826
TCONS_00021184 mRNA downstream 21342 31982149 ~ 32006737 (-) False XLOC_010826
TCONS_00021194 mRNA upstream 71132 32110195 ~ 32128345 (-) False XLOC_010830
TCONS_00021195 mRNA upstream 71133 32110196 ~ 32128345 (-) False XLOC_010830
TCONS_00021198 mRNA upstream 128367 32167430 ~ 32184460 (-) True XLOC_010832
TCONS_00021199 mRNA upstream 158491 32197554 ~ 32204470 (-) False XLOC_010833
TCONS_00021201 mRNA upstream 166597 32205660 ~ 32208728 (-) True XLOC_010834
TCONS_00021178 other downstream 113379 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021163 other downstream 376896 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021159 other downstream 399392 31623975 ~ 31628687 (-) False XLOC_010809
TCONS_00021160 other downstream 399895 31626002 ~ 31628184 (-) False XLOC_010809
TCONS_00021143 other downstream 593059 31432847 ~ 31435020 (-) False XLOC_010803
TCONS_00021196 other upstream 77608 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021197 other upstream 113136 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021200 other upstream 160389 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021209 other upstream 535047 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 591011 32630074 ~ 32649804 (-) False XLOC_010844

Expression Profile

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