RNA id: TCONS_00021218


Basic Information

Item Value
RNA id TCONS_00021218
length 3124
RNA type mRNA
GC content 0.50
exon number 11
gene id XLOC_010845
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32652350 ~ 32673028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cGTCTCATTACCACGAtgactttactggggcattagcgCCCGCAcggaccgcaggttgagcgccccctgctggcctcactaaccaCTTCCAGTTCCAACAGCaatctagttttcccatgtggtctcccatcaaggTACTGACCAAGCTCAGACCTGCTtcgcttcagtgagtaaccggtctcgggctgcagggtgatatggctgtcaTACTCCTATATAGTTCGGGCTCCAAAATTAGTTTGCTAGGCAGTAGCTATATCAAAAAAATGCTAAACTGTTATGTTTGGTACTTGTTTGTTAATGAttagaaaatgcttttaaattcagtcttattttttaataatttaagctATTTCATtctatatttttgtgtaaatgacCAGTTTGAAAATAAGCTGTCATTACAGAAGTCTGAAAAGGTTAACAGGTTGTGAACACCTGATTCAGTACCATACTTGACAACATttcttactgtttttttttttactacagccTACATTAAAAGTTAGGATTTTTGGTTATCCAGAGgataacaaataatttaattacggGATAGTGATAATATTAAATGATGGTACAGTGTTTGTTATTGTCATTAATCTGGCCTTGAAGTGTCCCGTGTGTATCCGCTAGAGGGCCTGTGGGTTGAGGTCACGGATGCCGCCACTGTTTCCGGGTCATCATTTCATCGCCATTTTACTGCTAAGAAGCAGAAGTGAAGAGGATTCAGAGGAGAGAGATGTGGGATCAGGGAGGACAGCCCTGGCCTCAGTGGCCCCTGGGCTCACAGCAGCAGTGGATGCAGTCATTTCAGCATCAGCAAGATCCAGGTCAAGTGGACTGGGCTGCTTTAGCACAAGCATGGATTGCACAGAAGGAATCCACTGGAGTTCCTGATCAGCCAGGGATTCAGCCCAATGGCCAGGAGATGCCAAACATGGAGCCTCCAGCCCATAATAACCATGGTGCCTTTCCAGGCGATCCAAGTTTTGGCAGAGGTTGGCAACCAGAGTGGGGAATGCATAGCCAGCCACCACCTCCCCCTCCTCCAGAACAAGCATGGATTCCTTCAGGTCAAGGGCCAATGGATGTTGTCAACCCCTCAGAAGACAGTAACAGCCAGGATAGTTTGGATTTTCCGGTAGAAACACGCCATGGAGGCTTTCCTCAAAACAGCCATGGATTTGGGAGTCAGCCTGAGCCTTATTCTATAGGCCCAATTGGGGTCAATCAGTTTGATTATCAGCATGGGGCAGCGCCAACGGGGACATCATATGGGCCACCATCCACCGGGTTTCATGCACCTTATTGGCCTGATGGGCCGCAGAACAGAAGAGACCGGCTTCCTGCCTTTAGGCCAGAACGGCCCAGATCTCCCAATCAGATGGCAATAAAACCAGAGACGACGCCCACTCTTGATGCTGTTAAACGAAGAACCTTGCCTGCATGGATTCGAGAAGGCCTTGAAAAAATGGATCGTGAGAAGCAGAAAAAGATGGAGAGGGAGAGGATGGAAAAGGAGCGTGCTGAAATGGCAAATAATGAAAGGGATAGCGATATAGTAGAGGAGGAAGGTGATGGGCCTCGGTTGCCACGCAAGAGCAAATTTGACAGTGATGATGAGGATGGTGAAGAGGATGGTGCTGTGGAAGATGGCGTATCAGGAAGGAGGCTGGAATTTGGTGGTAGAAGTCCTCCTCCTCTTCAAGAAGACCAAAGTGAACCAGAAATGACAGATGAGGAGAAAGAGTTTCAGCTGATGGTTATGACTAAAACTCTTCTTACCGAAGTCCTCCTCGAAGTCACCAATGAGGAGATCATCCAAGTGGCCAAAGAGGCTCATCGCAAAGCCACTAAAGGAGGGCTGGGTGAGTACGGCTCGGATGAGAGTGATGATGAGGAGCGAAGCTTAAAGGGGTCGGACTCATCGGACACAGACGATGAGGAGTTGCTGCACCGTATTCGCCAAAAGCAGGATGCCTTCCGTCGTAAAGAGAGGGAGCAGCAGCAGCTGCAGGAGAGGCTGGCACTGGAGATGCAAACTGTTAAGGatgaTTTGGCATCAGACCGAGTGAGCAGAGAAAGGACAGGTTATGAGGATGAGCAGACAGATTCTAAACACAAACAGGAAGTTAGGGAAAGGGAGGCGGAGCCTACAGTAGAGCGCCGCAGATCACGTAGTGAGCCTGAGGTCAGTGAGGTCAAGCGGACAAGCAAAGAGCACACAGGGCGTAACGGAGGCAGTGCCAGCCCCTCGCCGAGTGAGCGCCGCAGTCGCACATCCAGTTCCAGTTCTTCCAGCAGCCGGTCCTCTTCATCTTCCTCTTCCTCAGCCTCCTCTCGCAGCTCTTCCCGTTCCTCCTCTCCCAAAAGAAAAAGGCGACGCAGTCGTTCCGCCTCTCGTGGGACTCGCAGACGCAGCCGAAGTCGCAGCTCTCGCAGGCGTCAGTCAGAGCGGGACAAGGGCAGAGACAGGAGGCGGAGCAGCCGCACACGCAGCACCGAACGCTCCTCTCGACACAGAAAGCGCAGTCACTCACGGCAGCGCAGGTCCAGCAGGAGCCATAGGAGCAGATCTAAAGGCAGTCGCAGCCGCAGCAGAGAGAGGAGGCGCAGCAGGGACCGCAGACGCAGTCGCAGTACGAGCCGCAACAGGCGGAAACAGAAGGACAGCAGGGACAGAGACAGGAAGAAAGAGAGAAGCCGGAGCCATGAGaaggaaaagaagaagaaagagaAGGAATTAGATAAAAAGAAAGACAAGCAGAAGGGAAAGGAGAAGGAGATTGAGGGCAGTTCAGTAAGGGATGAGGAAGATTATGGCAAATCAAGGCGGAAAAAGGAGAGTGAGAAGACAGATTCCCATAATGACAAGTATTCCCGGCAAGACAGCAAATCTAGCAAGAAAGGCTCCACTAAAGCTAGCAAAAAGTACTCAGATTCAGAGTCTAGCAGGAGCAGGTCGCCTTCCCCTGAGGTTAGCAAAGAAAAAAAGTCTAAGAAATCTAAACGTAGTCGATCAAGGTCTACGGAACGGTCTCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCACGATCAAGGTCAACGTCTCCCAGCCGCCGCAAGCGTTGA

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0031314 extrinsic component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0010420 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity molecular_function
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity molecular_function

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis

ZFIN:

id description
ZDB-GENE-030131-362 Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein).

Ensembl:

ensembl_id ENSDART00000188776

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021213 lncRNA downstream 1945 32656103 ~ 32662731 (-) False XLOC_010845
TCONS_00022186 lncRNA downstream 37236 32587733 ~ 32627440 (-) True XLOC_010843
TCONS_00021814 lncRNA downstream 67400 32587438 ~ 32597276 (-) False XLOC_010843
TCONS_00022185 lncRNA downstream 104893 32558055 ~ 32559783 (-) True XLOC_010840
TCONS_00022184 lncRNA downstream 275382 32388257 ~ 32389294 (-) True XLOC_010839
TCONS_00022187 lncRNA upstream 69314 32742342 ~ 32819591 (-) False XLOC_010847
TCONS_00022188 lncRNA upstream 70819 32743847 ~ 32819477 (-) False XLOC_010847
TCONS_00022189 lncRNA upstream 76376 32749404 ~ 32819477 (-) False XLOC_010847
TCONS_00022190 lncRNA upstream 80458 32753486 ~ 32819477 (-) False XLOC_010847
TCONS_00022191 lncRNA upstream 80458 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00021212 mRNA downstream 1729 32652350 ~ 32662947 (-) False XLOC_010845
TCONS_00021211 mRNA downstream 14747 32630074 ~ 32649929 (-) True XLOC_010844
TCONS_00021208 mRNA downstream 81878 32566218 ~ 32582798 (-) True XLOC_010841
TCONS_00021205 mRNA downstream 359896 32281432 ~ 32304780 (-) False XLOC_010837
TCONS_00021223 mRNA upstream 3489 32676517 ~ 32727199 (-) True XLOC_010846
TCONS_00021224 mRNA upstream 147299 32820327 ~ 32829804 (-) False XLOC_010848
TCONS_00021225 mRNA upstream 150724 32823752 ~ 32837806 (-) False XLOC_010848
TCONS_00021226 mRNA upstream 159185 32832213 ~ 32976011 (-) False XLOC_010848
TCONS_00021227 mRNA upstream 170287 32843315 ~ 32975951 (-) False XLOC_010848
TCONS_00021210 other downstream 14872 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 90440 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 460247 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 500881 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 545073 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 430855 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 842738 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 1077039 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1627251 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1629149 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

//