RNA id: TCONS_00021221


Basic Information

Item Value
RNA id TCONS_00021221
length 675
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_010845
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32652350 ~ 32673028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAAATGGATCGTGAGAAGCAGAAAAAGATGGAGAGGGAGAGGATGGAAAAGGAGCGTGCTGAAATGGCAAATAATGAAAGGGATAGCGATATAGTAGAGGAGGAAGGTGATGGGCCTCGGTTGCCACGCAAGAGCAAATTTGACAGTGATGATGAGGATGGTGAAGAGGATGGTGCTGTGGAAGATGGCGTATCAGGAAGGAGGCTGGAATTTGGTGGTAGAAGTCCTCCTCCTCTTCAAGAAGACCAAAGTGAACCAGAAATGACAGATGAGGAGAAAGAGTTTCAGCTGATGGTTATGACTAAAACTCTTCTTACCGAAGTCCTCCTCGAAGTCACCAATGAGGAGATCATCCAAGTGGCCAAAGAGGCTCATCGCAAAGCCACTAAAGGTCTGCTCCTGTTCCCTTCTGTCCATGCAACTGTGCCTTCAAGTTTAATTCTGAGGAAGAGACAGATTTCCACAGCAATTATACTTGGTTATATTTTGACTATATAAATACAACGGCTTTTTTGTCTGACTGATGCACCTTGGTAACTTTTAAAATAAGCCAAAGTGAAATTCTTCAATGGCCATTCTCTGCTAATGCAACGGAAGACGAAAAACAAACTGCAAGAGGGTGGAGGGTGAAATGGTCACGTAGATGCAGTTAAATGCAATCTTTCAAAGGGT

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0031314 extrinsic component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0010420 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity molecular_function
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity molecular_function

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis

ZFIN:

id description
ZDB-GENE-030131-362 Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein).

Ensembl:

ensembl_id ENSDART00000147544

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021219 lncRNA downstream 215 32665583 ~ 32668496 (-) False XLOC_010845
TCONS_00021213 lncRNA downstream 5980 32656103 ~ 32662731 (-) False XLOC_010845
TCONS_00022186 lncRNA downstream 41271 32587733 ~ 32627440 (-) True XLOC_010843
TCONS_00021814 lncRNA downstream 71435 32587438 ~ 32597276 (-) False XLOC_010843
TCONS_00022185 lncRNA downstream 108928 32558055 ~ 32559783 (-) True XLOC_010840
TCONS_00022187 lncRNA upstream 71939 32742342 ~ 32819591 (-) False XLOC_010847
TCONS_00022188 lncRNA upstream 73444 32743847 ~ 32819477 (-) False XLOC_010847
TCONS_00022189 lncRNA upstream 79001 32749404 ~ 32819477 (-) False XLOC_010847
TCONS_00022190 lncRNA upstream 83083 32753486 ~ 32819477 (-) False XLOC_010847
TCONS_00022191 lncRNA upstream 83083 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00021212 mRNA downstream 5764 32652350 ~ 32662947 (-) False XLOC_010845
TCONS_00021211 mRNA downstream 18782 32630074 ~ 32649929 (-) True XLOC_010844
TCONS_00021208 mRNA downstream 85913 32566218 ~ 32582798 (-) True XLOC_010841
TCONS_00021205 mRNA downstream 363931 32281432 ~ 32304780 (-) False XLOC_010837
TCONS_00021223 mRNA upstream 6114 32676517 ~ 32727199 (-) True XLOC_010846
TCONS_00021224 mRNA upstream 149924 32820327 ~ 32829804 (-) False XLOC_010848
TCONS_00021225 mRNA upstream 153349 32823752 ~ 32837806 (-) False XLOC_010848
TCONS_00021226 mRNA upstream 161810 32832213 ~ 32976011 (-) False XLOC_010848
TCONS_00021227 mRNA upstream 172912 32843315 ~ 32975951 (-) False XLOC_010848
TCONS_00021210 other downstream 18907 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 94475 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 464282 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 504916 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 549108 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 433480 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 845363 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 1079664 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1629876 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1631774 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

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