RNA id: TCONS_00022189


Basic Information

Item Value
RNA id TCONS_00022189
length 1340
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id XLOC_010847
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32742342 ~ 32819765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGGTTTCCCGACAGCCTGTTGTTTATCGGGCGGGTACCACGCGCAGAAGCCAAGCGAGATTCAAAGGCCTGACAACTTCTTTGTTAATTGGAACAGGCTTCTCGCTATGTGTGCGGCGAGGGTGGTGAAAAGGCTGAGATACAAGCTGACAAGTGTGAGCACGAAGTAGAGTCGcgtttaattaattttcctttcaCCCTTGGGAACCGCGCCGAGCCCGGCTGTGATACATTTCGATGTGAAATCGACGAAATACCTCACAGTTGGAGCATTTCTTCAAGTTGGAGGTGCTTTTGTGTTTGTGGAATGAATGTGAATCTGCCAGTCTCGCAAGTGTAGAATGAAAAACATAAGTATAGTCGATTTGACCCAGAGATTGAACTCATTGTTGAATCGCTGCAGTATGTAGGCCGTTACACTTTGAAGGCCTAAGCATTGTGTGAATGTGCGACAGCACCTGCACATGAGCTGAAGTGAAACACTGGACAGCTTTAGCAAAGTTCAGCTGGACCTCCATTGAAGGCCACCCTCTCAAAACTGAAGTGGACAATGACAGATGATAACTGTTTATCTCACATCATTCTCCAAATGAACAGAACTGAAGACACAGAGGCGATGACTGGTAACAGCCGAGGTTTTGAAAGATAAAGTCACACGTGATTGTGCCACTGTATGAAGAATGGAGGGAGGAGAAGAATGCTGCATATCAAGGACACACCAATGTGGAGCAGGAAAGAAAATGAAATGGCATAGAATAGCCTACCGTGTGGAGAAAAATTGCTGCTTTTTCAGTACTACACCAAGTCCTCTTCCCCTAATCTAAAGGTTCCTTGCGGTCCGAAACATACTTTCCCAGTTTGAAGATGCCCGGGACCGGTCCTATCCGAAGACCGGCTGGGATGCTGCAGTCGGCGTACACGCTGATAGTGGGTGTCCGAGTCGTTTGCATGGTTGGCTCTGTGTGGGGCTTTCGCTGTCAGAACCAGGAGGACCAAGCAGGCGCTGATTGAGATGAGCAGAGAGTCTGAGATGAGGACAGACTAATATCCGCCCGCCAAGTGACGCGGTGGCGTGTGTGATCCGGCTTTTCTTATGGCGCAGTCAGGTACCCCTCGGCACATTAATGCGCAAGGGCGAGCAGCGCGCTATGAGAGAGTTGCGCTCTTTTAGCAGCTGTAGAGCCCTCCGAGATGGTCACATGGAGACTTTCCCTCACCCTCACGCATAATGAACCGCTCCAAACGGTCAAGAGACAATAGGCCCCAGCGACCTTCCCATCCCCAAAATCCAATTTGTCAAGGGCAGAGAAAAGAGAGTGCAGAATCAAAGGTCTGGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021221 lncRNA downstream 79001 32668711 ~ 32670403 (-) False XLOC_010845
TCONS_00021220 lncRNA downstream 79831 32667850 ~ 32669573 (-) False XLOC_010845
TCONS_00021222 lncRNA downstream 79831 32668891 ~ 32669573 (-) True XLOC_010845
TCONS_00021219 lncRNA downstream 80908 32665583 ~ 32668496 (-) False XLOC_010845
TCONS_00021213 lncRNA downstream 86673 32656103 ~ 32662731 (-) False XLOC_010845
TCONS_00021229 lncRNA upstream 68560 32888037 ~ 32975916 (-) True XLOC_010848
TCONS_00022194 lncRNA upstream 221522 33040999 ~ 33060053 (-) True XLOC_010849
TCONS_00022195 lncRNA upstream 741386 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA upstream 747520 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021241 lncRNA upstream 763391 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00021223 mRNA downstream 22205 32676517 ~ 32727199 (-) True XLOC_010846
TCONS_00021218 mRNA downstream 76376 32664676 ~ 32673028 (-) False XLOC_010845
TCONS_00021215 mRNA downstream 76521 32664350 ~ 32672883 (-) False XLOC_010845
TCONS_00021224 mRNA upstream 850 32820327 ~ 32829804 (-) False XLOC_010848
TCONS_00021225 mRNA upstream 4275 32823752 ~ 32837806 (-) False XLOC_010848
TCONS_00021226 mRNA upstream 12736 32832213 ~ 32976011 (-) False XLOC_010848
TCONS_00021227 mRNA upstream 23838 32843315 ~ 32975951 (-) False XLOC_010848
TCONS_00021228 mRNA upstream 23838 32843315 ~ 33001153 (-) False XLOC_010848
TCONS_00021210 other downstream 99600 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 175168 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 544975 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 585609 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 629801 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 284406 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 696289 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 930590 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1480802 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1482700 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

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