RNA id: TCONS_00021224


Basic Information

Item Value
RNA id TCONS_00021224
length 4029
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_010848
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32820327 ~ 33001153 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGTTTGTAAGGTCTGTATTACTCATTGATTGATGTTCTGCAGATACCTGGCTCTTGTTCATCCATTTCGCTTGTTGAGTCTCAGGACCAGATCCAGGACCATCCGCATTAACCTGTTTGTGTGGGCAGCTTCTTTCATCATGGTTCTGCCGGCCTGGGTTCATGCCAAAGTCATCCGCTTCAGGGACGGTCTGGAGAGCTGCTCACTTAACCTGGTCTCTCCCAAACAAGTGCTCTGGTACACGCTCTACCAGACTGTGACGTCCTTCTTCCTGCCATTACCTCTGATCCTGATCTGCTACATACTGATCCTCTGCTACACCTGGAGAATGTATCGCAAGAACAAAAAGGCTCACAGGTACAACACCAGCCTGCCTCGGGAGCGTGTGGTCCGCCTGACTAAAATGGTCCTGGTCCTGGTTGCGGTTTTCCTGGTGAGTGTTGGGCCATACCACATCCTGCAGCTGGTTAACCTGAGTGTTCCTCGGCCCTCGCTGGCATACCACACCTGCTACTACCTGTCTGTGTGTCTGAGCTACGCCGCCAGCAGCATCAACCCCTTCATCTACATCCTGCTAAGCGGACACTTCCGCCACCGGCTGGTTTGTCGAGATACACCAAGCATGCCGAGTGTGGAAAGAGAAATCCAGGCTCCTCGCTCCAGCTTTTAAACAGAATTCACACTGGAAACACAAGATAATGCTGGAAGTGGATTGATGAATCCATGAGGCTTTTTTTGGTCTCGTGTAAAAGGCAGCTGTTTTGGgtaaaaatttgtttgttttctttttacctGATAGAATGTATCTCACACAGAAGCATGGGGTGTTTAATATGTGCACGAATGCatgtcttgtcttttttttttacagcaggtCTATTCTGTGAATGTGTTGTAAGAATTGTGATGTCTTGGCTCCCTCTGCTGTTTAATTTTAGTAATTTACAATCTCAAAAAATCTTCTTATATATGTCATGAATACACAAAAATGCTGGGTATGAGTTGTTGGTTTAAACTTAATGCAGGGACTGAGTTTGCCCATTTTTGCCCATATTTTACacaaattcagatttattttaatcataattttaatgtctttttttgcatctttttattaacattttcactGTTACAGTTTTCTCAGTCAATTTGGcacatttttcagatcagaatTAAAATTAGCAAAACAgcaagtgcatttctcaaaacactgTGTACAACTAACAAAACAGCATGAATCACCTGCAAAAGCCAGTCTCTTGCTCAAAATccttagttcatctctcaaaacATTACTGTATCAATGAACAAGTCAGTGCTGTCAGAATTatgataagacagtcaaattactttgTTGTCAATGTTGTCAATACTATAGTGCACTCTGTAGGGCTTTTCTGGTATCATCGATggctatttatattttatgctgTTTGTACTGTAAATGATGTCATTGTGATGCAGAAAGGAAAATACAGCACCGCAtagcacaaagaaaaaacaaaacaaaatagaaatgtgaacataggacaaccTCCTTTTAGACCTTCATTAGAAAAATCTAGATTTATGTGGGAGAAATTTACCAACTGtagacagatttagaaaaaaagtctaattgaataaaaaaatgcattatgacaaaatattatgacaacttgttcagtCATTTGCATGTAAAGACTTGCCATGAACAATGAATTAAACATTGTGATGGGTGAGACTATTTAacattttgatcaacatgacataagcaattgATAATGTATAGGCAACAGCAGACATCTGCGCACAGTCATTATCATGGATGTACAAAAacatttgcaacttgttcaaaggaatgagaaactgcttttctgatgtgcacaagtgacacgATGTGAAGATTTAACAAgtagttttgagaatttcaattctgatctgagaaatgaaCCGAAGTGACTAAGACAAACTGTAATCATGAAACACTTTGAACCAAATCAACAGACAATGCCTATTTAACAATGCAATGCTAAAGAAAGACAGAATAAATTAGAaacttattttttgtatttttgccatgatgacattaaataataatttactagatatttttcaagagacttctatacagcttaaagtgatatttaaaggcttaactaggttaataaggttaactagacaggatagggtaattaggcaagttattctataacgatggtttgttccgtagacaatcaataaataatttagctttaaggggctaataagtttgtcctaaaaatggttcataaaatagttcagtctgcttttattctagaaaaaaaaaagtaaaaaaatattatcagacataatgataataatgataatcataatGCTAAAATGTCCCTGCTccaataaacatcatttgggaaatatttaaaaaagaaaaagagattcCAAAATtccaatgggggctaataattctgacttcaactgtatatatatatatatatatatatatatatatatatatatatatatatataataagcaaaactaatatataaatatacaataataataaaataaaatacataaattcaaTTATGACATCGTAACCCAAAATACAGCTTGAAGAAGCATCAATAAAATCTAAGTAAAGAGTCCAGACTTGATGAAAAGCCTTCACATACGAACGACATACGAACGACACAGGcaatatttaatgtcattttaatataattttctcACATTTGAATTAAACTTCTGCATCTGAAATGgcattgtaaattaatttaatcattgtTTTGAGGGTGCATTTATGAggcttaatataattaatatattaaatatttagggTACACAAGTACACAACTGTGGCTGTGGTCTTGCACTATATTATGGCTATGTTGTCTCATTTTGTTCTTGATgtggcattttaaaaatgtgacgTTTCTTTAATGTATTTTCAGCTGGTTTTTTATCACTGAGAATTCAGCAGACCAGGAATGCGATTAAAGATTATTTTGCAGTGAACAGAATATATTGAAGCCCACAAGCATGctttttcattcatcgtgtatgAATGCATTGCATTCTCACTATTACACACAAGACAAATCAATACAGCACGGGACAGAAAGTTGCCATTGTGCAGAAATGCTTTAAAGGCATTTTGGGATTGTCTGGTGTGCACTGGACATCATGATGTAGTAGCTGGCAGCTCTGATGAGTGAGGTCAATGACCAGACAGAAAGAGATGCAGAGATCTGTTCGCAGTGAGGAATCAATCTCTGACCAGACCAGAGACAGACTGAAATCCCATCTGACCTAAAGCATGCCCTGTGGCAATGGCTGGAAAGTGACTCCCTGTCTGTCTTTCAGTTATACCTTCTATGGCCTAGTAAACGAGCCAGAGGCAAAATACCAACCGATGTGTTCAAATACTTGTCAATATTAGTGTCGCAGTGTCAACATAGCTTGTTGAGACCATGCATTTCAATAATACTATTCAATAGAATAGTATAAATCATAAACTGTTGTGCTGTTGGCTTTGTCAGTGATTCCAGGGTTGTAATAGAGATTCTGCCTGGGCAGCAGGGTGCTTTATCGTGTATTGTTGGTTGCTCTGTTGCAAAAAtgagatgaaaaaaaataaataaataaagtacagaCGTCTTTGCCCTGGATCTTTctgtattgttttcttttttctcaaaCTTTGAATCATCAGTCTGGTCTCTGAATGTGCTGACTGACTACTGCTACTGTTGTTATGACATTGTTTGACCTTGTTTGTGACTTGCTTCATATGGCTCTGACCTTGTTACTTCCACCTCAGCAGATTGACTGTCTGTTTGTGTCATTCTTTTCACACAGGCTTTTGTTTTTATGTCTgttcaaaatattgtttattttattgtaaatatgagTTATTGAATTGAAGTGTGCTGTTTTTTAAATTGAACATTCTGTGGcatattagtaatttttttcagtaaTGAATGTGTACACGTGACAATAAATCAGTTGATATTGTGTGtcattgtaaataaattgaaaatg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-030502-6 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in integument. Orthologous to human MCHR2 (melanin concentrating hormone receptor 2).

Ensembl:

ensembl_id ENSDART00000180723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022193 lncRNA downstream 562 32753486 ~ 32819765 (-) True XLOC_010847
TCONS_00022187 lncRNA downstream 736 32742342 ~ 32819591 (-) False XLOC_010847
TCONS_00022192 lncRNA downstream 753 32753486 ~ 32819574 (-) False XLOC_010847
TCONS_00022191 lncRNA downstream 797 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00022188 lncRNA downstream 850 32743847 ~ 32819477 (-) False XLOC_010847
TCONS_00021229 lncRNA upstream 58233 32888037 ~ 32975916 (-) True XLOC_010848
TCONS_00022194 lncRNA upstream 211195 33040999 ~ 33060053 (-) True XLOC_010849
TCONS_00022195 lncRNA upstream 731059 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA upstream 737193 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021241 lncRNA upstream 753064 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00021223 mRNA downstream 93128 32676517 ~ 32727199 (-) True XLOC_010846
TCONS_00021214 mRNA downstream 147299 32662469 ~ 32673028 (-) False XLOC_010845
TCONS_00021226 mRNA upstream 2409 32832213 ~ 32976011 (-) False XLOC_010848
TCONS_00021227 mRNA upstream 13511 32843315 ~ 32975951 (-) False XLOC_010848
TCONS_00021228 mRNA upstream 13511 32843315 ~ 33001153 (-) False XLOC_010848
TCONS_00021230 mRNA upstream 175884 33005688 ~ 33059269 (-) False XLOC_010849
TCONS_00021232 mRNA upstream 178257 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021210 other downstream 170523 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 246091 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 615898 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 656532 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 700724 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 274079 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 685962 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 920263 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1470475 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1472373 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

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