RNA id: TCONS_00021228


Basic Information

Item Value
RNA id TCONS_00021228
length 1910
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_010848
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32820327 ~ 33001153 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTTGAAATATATAGGTTTAGCTTCATAAACACTGAGCAGAGAAGATGGAACTCGGGTGGAGGAGGAGGCTGCATCCATGTACTATTGGAGAACCAAAGGAAGACTGAGGGGATGGCCTTCTCCCTGGAGGAGCGCTTGCAGCTGGGCATTCATGGGCTGTTGCCACCCTGCTTCCTCAGCCAGGATGTGCAAGTTTTGCGGGTCCTTAGGAGCTACGAGCTGTTAAAGGAAGATTTGGACAGGTATGTCTTTCTAATGGGCCTTCAGGACCGTAACGAGAAGCTGTTCTACCGGGTGCTGACCTCAGACATAGAGAGATTCATGCCAATTGTGTACACACCTACCGTTGGCCTAGCGTGCCAACAGTATGGCCTGACCTTCAGGAGACCGAGGGGCCTTTTTATTACAATTCATGACCGCTCCCACATCCCCACACTTCTTCAGAGCTGGCCGGAGAAGGACATTCGTGCTGTAGTGGTGACAGATGGAGAGAGGATTCTGGGCCTGGGGGATCTGGGCTGCTATGGCATGGGCATCCCTGTGGGTAAACTGGCCCTGTACACTGCCTGTGGAGGAATGCCGCCTCAGCAGTGCCTGCCTGTTATGCTGGACGTCGGCACAGACAAAGAGGAACTTCTGAAGGACCCACTGTACATTGGTTTGAGGCATAAAAGAGTACGTGGACAGGCCTACGATGAGCTTCTGGATGAATTTATGAAGGCCATCACAGACAGGTATGGGATGAAATGCCTTATCCAGTTTGAAGATTTTGCCAACATTAATGCCTTCCGCCTGTTGAGTAAATACCGCAACAAATACCTCACATTCAATGATGACATCCAAGGCACTGCTGCTGTGGCTGTGGCAGGCCTCCTAGCTGCCCTTCGCATTACCAAAAGCAAAATGTGTGACCATACCATTGTGTTTCAGGGTGCAGGCGAGGCTGCAATGGGCATAGGTGAGCTGATTGTCATGGCAATGGAGAAAGAGGGTCTTCCTCGTGAGCAGTGTATAAAGAAAATCTGGATGGTAGACTCTAAAGGACTTATAGTTAAGGGTCGAGATCACCTCACCCATGAGAAAGAGAGGTTTGCACATGAGCATGCACAAATGAAAAAGCTTGAGGATGTTGTAAAGGAGCTGAAACCCACAGCTATAATTGGGGTGGCAGCAATCGCCGGCGCTTTCACAGAAGAGATAATCAAGGCTATGGCATCCTTCAATAAGAATCCTATTATCTTCGCTCTCAGCAACCCCACCAGCAAAGCTGAGTGTACAGCTGAACAGTGCTACACACTCACTGAGGGAAGGGGGATATTTGCAAGCGGAAGTCCTTTTGATCCAGTAACTCTTCCCGATGGGAGGAAATTCTACCCTGGTCAGGGAAACAACTCGTATGTGTTCCCTGGAGTGGGGCTGGGAGTCACTGCTTGTGAAATGAGACACATCCCTGAGGATGTTTTCCTTGTTACagctgagGCTATAGCAGAACTGGTGACTGACAAGGATCTCGCAGAGGGTCGTCTGTATCCTCCTCTCAGCAGCATTCGGGAAGTTTCCATCAAACTGGCTGTGAAGATAGTGGAGTATGCATATAAGCACAAAATGGCTACGCTGCACCCAGAGCCGCAAGATAAAGATGCTTTCATCCGTTCACTCATCTATAGCACAGACTACCAAGAGTTTGCTGTGGACTCATACAGCTGGCCTGAGAACGCCATGACCGTCCAAACATGTAAACTATGACCATCCAAAATACACAGACCACAGTGAGattcattaaaaattataataagcggaaatttatttttaaaaatctgttttaagtGTGATGTTAGTCATGATTATATGCAAACAGTACTGTAAACCAATTATGTCCTTAATAAAATGTGTACTTTATGAAAAGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-061013-438 Predicted to enable malate dehydrogenase (decarboxylating) (NADP+) activity. Predicted to be involved in malate metabolic process and pyruvate metabolic process. Predicted to be active in mitochondrion. Orthologous to human ME1 (malic enzyme 1).

Ensembl:

ensembl_id ENSDART00000147941

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022193 lncRNA downstream 23550 32753486 ~ 32819765 (-) True XLOC_010847
TCONS_00022192 lncRNA downstream 23741 32753486 ~ 32819574 (-) False XLOC_010847
TCONS_00022191 lncRNA downstream 23785 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00022189 lncRNA downstream 23838 32749404 ~ 32819477 (-) False XLOC_010847
TCONS_00022194 lncRNA upstream 39846 33040999 ~ 33060053 (-) True XLOC_010849
TCONS_00022195 lncRNA upstream 559710 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA upstream 565844 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021241 lncRNA upstream 581715 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00021242 lncRNA upstream 581715 33582868 ~ 33592106 (-) False XLOC_010853
TCONS_00021225 mRNA downstream 5509 32823752 ~ 32837806 (-) False XLOC_010848
TCONS_00021224 mRNA downstream 13511 32820327 ~ 32829804 (-) False XLOC_010848
TCONS_00021223 mRNA downstream 116116 32676517 ~ 32727199 (-) True XLOC_010846
TCONS_00021218 mRNA downstream 170287 32664676 ~ 32673028 (-) False XLOC_010845
TCONS_00021217 mRNA downstream 171317 32664676 ~ 32671998 (-) False XLOC_010845
TCONS_00021230 mRNA upstream 4535 33005688 ~ 33059269 (-) False XLOC_010849
TCONS_00021232 mRNA upstream 6908 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021231 mRNA upstream 6908 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021233 mRNA upstream 61417 33062570 ~ 33097398 (-) False XLOC_010850
TCONS_00021234 mRNA upstream 61703 33062856 ~ 33095161 (-) False XLOC_010850
TCONS_00021210 other downstream 193511 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 269079 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 638886 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 679520 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 723712 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 102730 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 514613 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 748914 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1299126 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1301024 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09860217_09913586.mRNA True 1638 mRNA 0.52 13 CI01000027 9860217 ~ 9913586 (-)