RNA id: TCONS_00021233


Basic Information

Item Value
RNA id TCONS_00021233
length 8130
RNA type mRNA
GC content 0.49
exon number 38
gene id XLOC_010850
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33062570 ~ 33097398 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGCGCATGCGCAGTACAGATTATTTCACCTGTCAACGACTTTCATCAAAAATGGTTTCATCCGCAGAGTGTCAGCGCATTCGGGACTGATGGCAACATTACCTCTGCTGAATAACAGATGGCTTTACTGAAAGCAGATATGTGATCTCGCCAGCGGCGTCCCGGAACGCTTATTTTGCCGTCAGTATAACCACCGACGTCGCATCTGACCGTACATCGCTCACaaccattccatccatccatccatccatccatccattcatccacttaTCCATCCACACATTCAACAAAACAAACAGCCCCCTCACTGGTCAGATCTTCACACAAAAATCGTCGTCCGACTGACAACGAAGGTGTGATGTTTGTATGTGACCTCGGAATTGACTTTTAGTCCCATCGTGTAGGACGATGAATGCAGAGGAGTTGGAGCTCCTCGGTGACTCAAAGTATAGGAACTATGTGGCAGCAGTTGATAAGGCCTTAAAAAACTTTGAGTACTCCAGCGAATGGGCCGATTTGATCTCAGCGCTCGGAAAGCTCAACAAGGTCTTGCAAAACAATGGCAAGTATCAGGTTGTGCCCAAGAAACTGACCATTGGAAAGCGTCTGGCCCAATGCCTCCACCCAGCGCTGCCCAGCGGGGTTCACCGCAAGGCTTTGGAGACCTACGAAATCATCTTCAAGATCATTGGACCAAAGCGCCTGGCGAAGGATCTTTTCCTCTATAGCTCTGGGCTCTTCCCTTTATTATCCAATGCTGCTATGTCTGTGAAGCCAGTATTACTTGGGTTATACGAGACCTACTACCTGCCATTGGGGAAGACTCTTAAACCAGGCTTGCAGGGACTCCTGACTGGGGTGCTACCTGGACTGGAAGAGGGCTCAGAGTATTATGACAGGACCAACACCCTGCTTGAAAAGGTGGCTGCAGCTGTGGAGCAGCCGGCCTTCTATAGTGCCCTATGGGGGAGCATCCTAACCAGCCCTGCTGTGCGTCTGCCTGGAGTGACCTTCGTCCTACTGCACCTTAACCGAAAACTGTCCATGGAAGACCAGCTGTACATCATCGGCAGTGACATTGAACTTATGGTGGAGGCAGTCAGCACATCGGTGCAGGATTCAAGTGTGTTAGTGCAAAGGAGTACTCTGGATCTCATCTTGTTCTGCTTTCCCTTCCACATGAGTCAGGCTACACGTCCAGACATGATCAGGATACTGTCTGCAGCACTTCATGTTGTACTAAGAAGAGACATGTCCCTGAACCGAAGACTTTATGCTTGGCTACTGGGCTTCGATAACAATGGTGTGAAAGCAGGCCCTCGCAGTACTCGCCTCAGTAATCCAGAGGAGCATGTCACACACTACTTCAACACTTACTCCAAGGAGATGCTCATTTTGGCCATGGTGGGGATCTTGCAAGGAAAGGCTAGAGGAGGGGAGGAGGAGAGCATCCTGATGCACGACTTGAAGCCGTTTCGCATTCTCATCAGCCTTCTTGATAAGCCTGAACTGGGCCCAGCAATCTTAGAGGATGTTCTGATCGAAGTGTTCCGCACCCTGCACACTCAGTGCCGCGCTGAGTTAGACCTGCAGAACCAAAACCCCTTCAGCAAAGATCAAACTCAACTTAGCAGCAAACTCAGAGAGAACAAGAAAACAGCAGAGCTTATAAAAACAGCCAACCTCTTGTTTAACTCCTTCGAGCCCTACTACATGTGGGACTATATTGCACGGTGGTTTGAGGAGTGTTGCAGGTGGACTCAGAGCAGTCATACCCCTGGGCAGACTTTGAGTTCTGAAACATCAGCACGCTCATTGGTTGAGTTTTGTGAGCTGGTGGACTTCTTGTTGGACATTGTGTCTTTGCCTACTAGAAGCATGAGGGTTATCTGCCAGGAGACGTACATTGAGATCCAGACAGAACATCTACCTCAGTTGCTGCTGCGGATGGTTTCCGCTCTTACCACACACCTGCAGGCACTGGGTCTCCGAGAACTCACTCACTGTCTGCGCCTCTGCTCGAAGATTCTCAGCAAAGTACAACCCCCTCTCGTGTCACCCCTTACACTGCCCCCCGGTCCATCCTCTGCTGCAACTACCCCTTCTGCAAGAGACAAAGATGAGAAAATGATCCTACCAATAACAGGCACTGAGGTATTTGATGATAGCGAGAACGCTTTAAGTGGCCGGTTGTCAGAAAGTGGATTCACTGACTTCATTCAGTACCAAGCAGAGCGTGGTGATCAACCTGATAATGTGCAATGCCTTGAGGATGAGGCATCCAGCCCTGAAGACGTTCCTCTTCAACTCAAACCTAAACCCAAATATGGGTTCAGTAGTTCAGCCAACAGCAAGCCCCAGGACAAACCAGTGATGCAGTCCTGCCTTGAGCATTTCCAGCAGTTCCTTTCTTGCTTAGTGAGGCTATACATCACCCCAGGTGGTCAGACAGAGGCAGGGAAGAGCTGCAGTGCAGAAATGGACACTCTAACAGTGGTGGCTGATAAAAGATGGACAAGTGGCTTTGAGGAGCAGATGTCTTCTGAGCAGATGGAATGTCTTGCTGCGTTCACTGCTGCCTGTCAGCTCTTCCTGGAGTGTTCCAGTTTTCCGGTTTACATCGCTGAGGGCAACATGAAGTCTTCACCCACTAGAGAGGAGCAGGCAGgtGACAGTATTCAGCCAGCAGTGTGGCTTCAGACTCTAATGGATGCATGCTGTTCCGATACTGATTTCAGTATTCAGGCAGTGGCTGTATCACTTGTCATGGACCTTGTAGGACTTACACAGTCTGTAGCTATGGTGACAGCTGAGCGTGTGGCAAGTCCAGACTCAAGCCAGCCAATGAGTCCAAGCCAGGGTCGTGTTGCAGTGGTGATTCGACCGCCACTCACACCTGGTATTTTGAAGTATATTGCAGAGAAAACAGATTTCTTCAAGAATGTAGCTCTTATCTTATGGCATCAGCTCGGAGAAGAGACTCCCCAGCATCACAAGCGCAGTGTGGAGCTTTTTTACCAGCTCCACAATTTGGCTCCCTCGCCCAGCATTTGCGAAGATGTCATTAGCCAGCAACTCATGCATCGGGACAGGagaATACGTCTGGAGGCTCATGTAAAATTCTCAGTTCTTTGGCACCTAACCAGAGACCTAAACATCACCAAGTCCTCTCCTTTTAATCGGTCCTTTGACAGGTCCCTGTTCATCATGCTTGATAGTCTCAGTTATTGGGATGGCTCTTCAAGTGCTGTTGGCAGGGCCTGGTTGAACCAGGTTTTGCAAAGACATGACATAGCTCGTGTTCTTGAACCTCTACTACTTTTGCTATTGCACCCCAAAACCCACCGTGTATCCATACAGCGTGTTCAAGCACAGCGACACTGGACCCAGGCCTTTCCTAATCCACCAGAAAATGAACCCTCTGACCCTATTTTCATGAGGGATATTGGCTATACTGAAAATTATAGCCAGATATCAGGGAATTGCCATAGGGTTGTCCAAGAGTTTGGCAGAAGCCTTCCATTAGATGATATGGAACCCTTTAGCCTCACAGTCAACCCGTTGAGTGACAGTATTTCTCTCTTGAGTCTTAGCAGTGAGAACCTGCAGCTGTGTGGCGAATATCAACCACCTGATCAGCAGGGGGAGCCCAATAGCTCAGATTCGAGTGGCTCACAATCCTCAACTGTAGACAACGGCAGCTTTGATGAACTGGAGGGAGGTGGCAGCTCTGTTAATATATTGGATCCTATGCTTTGTCAGTCTGTTTCATTAGAGGAAGAGTCCATGCACAAGGCAGTTTCTGCTGTGGTTTTTGAGCTAGTGGACAGGGTGGTGCAAATGGTGGAGAAAGAATCTGAGACACCATCTCCTGATGCCTGGCCTCAGACAGACTCTGACAGTTCCAACTCATCCACAGATACATCAAATGAGCCAGTGGAAAGACTTGCCCCCTTCTCTAACACCCAGCCTAAAACACTTCCAGAACTAGTTGCAGGGGGAACCTTGGAGTTTCTTGCTGTGGCCGCAATTGATGCTTCTGGGGAAGAGGAGCATCGGGAAGGCATTGCTCGGCATAGCTCGTCCCCTTCGATCATTACACTGCCAGATGGCGGTGGCAGTGCTTCCACAGAGCAGAGTCTCCAGGTAGATGACCCGCACCGCAAGCGCAGCCACAGCAGCATCCAGCTCAGTCTAAAGGGCAAGATTATGGAGCGCCTGGTGGATAAATCACCAGGAGCCAAGCCCAAAATCAAGAAAATCAAGAGGAAAGATGAAGAGAGACGTAAGACTAACCAGCCCGAGAAGAACAGGCCACCCAGCATCTTCTTTGGAGACAGTCTTGACTTGGAGAACTGGTACAGCTGTGGGGAAGGTGAAGTATCAGAGATTGAGAGTGATATAGGCTCACCCAGTGGTGGGGCTGCGAGTGGAGGAGGAGGATCTCGCACCTCTGGGACACCTCCTCGTTTTAACATCCATCCCTTATACCAGCACGTGCTGCTTTATCTTCAGCTCTATGACTCCTCTCGGACTCTACATGCTCTCTCTGCTATTGCAGCTATGCTACGTGCTTCACCAACAGGATTTGTGAGCGCCATTTCCACCACCAGCATAAACAATACATATACACCACAGCTCTCTCTACTGCAGAACCTGCTAGCCCGCCATCGCATATCTGTCATGGGCAAGGACTTCTACTGCCCTATCCCGCAGGACTCACATTCCCACTCCTTCCGAAGTGCCATGTTCCTGGAGATCATAATCTCCCTTTGTCTCTATTTTCTGCGCAGCTATTACTCAGCCCATGTGGCTGCCACGTCACAGGATCTTTCAGGCAACCATGCCATGCAACTGACCAGCGTGGAGGTGTTGACTCTGCTCTTCAGCGAGCTTGCTAAAGTCACAGGGGGCTCAGCCAAGGGCTTTGCCAGCTTTATTTGTGATGTACTGTCTAAATGCAAAGTGCAGAAGGTAGTGCTACACTGTTTGCTTTCCACCATCTTTAGTGTACAGAAGTGGCATGAACATCGTGTTCGGGGTACTAATGTGGCTGCGGTTGAGGAGGGCCTTTCGGAGGACAGCGTCATCAATCTGTCAGAGGACCAGTTAGACAACTGCAGCTCCATACAGTCACAACTACTGCGTCTGCTGCAGAGCCTGGTGGTTTTGGAGCATCGAGTGATGATCCCAGTGGATGAGGGTGGCGAGGGAGGTCCTGGGACAAATGGGTCTAATGGAGGAGCTAATGGTGCTGGGGCTGGTTTTGAACTGATTGGGGGCGAGGTAGAGCATGTCAACCCACAACAACCCATGACTTCCCTGCAATACCTACATGGGCAGCCTATCACAGCACAAGGCATGTTTTTATGTGCTGTAATTCGAGCTTTGCATCAACATCATGCCTGTAAGATGCACCCACAGTGGATTGGCCTTATTACAACCACTCTGCCATACATGGGAAAAGTGCTTCGGCGAGTGGTTGCATCTGTTACGCTTCAGCTGTGCAAAAACCTCGACAACCTTATCCAGCAATACCGTCACGAGACAGGCCTCACAGACACAAGGCCCCAATGGATGGCACCGTGTGTCCCTCCTGACCTTATTTTAACAGTACTAGAAGGAATGACAGCCATAATCCATTATTGTCTGCTAGATCCAACATCACAATATCACCAGCTGCAGGCAAATGTAGATCAGAAGCACCTTGGAGAGGCTCGTGCAGGCATTCTCTCCATCTTGCACACCATCATGTCCTCCGTAACCCTTCTGTGGGGTCTCCTCTGTCTGACTGAGAGTTCTGACAGACCAGCTGCAGCCTCTGCCTGCTCCACTTCCAACATCAACCTAGGATCCACAAAGAATCTCAGGCAGCAAATTTTAGAGCTGCTGGGCCCGATCTCAATGAATCACGGAGCTCACTTTATGGCTGCTATTGCTTATGTGTGGAATGAAAGGAAGCAGGTTAAAACTCCATCTAGAAACAAGGTAATTCCCACAGCTAGTGAGGAGCAGCTTCTCCTTGTGGAGCTTGTTCGTTCAGTAAGTGCTATGCGAACCGAGACTGTAATACAGACTGTAAAGGAAGTGCTCAAGCAGCCCCCAGCCATTGCCAAAGAGAAGAAGCATCTATCCCTGGAGGTCTGCATGCTACAATTTTTCTATGCCTATGTGCAGAGGATTTCAGTGTCTAGTCTGGTTGATAGTTGGCCATCGCTCCTGGCGTTGCTTAAGGACTCTGTGCAACTCAGTTTGCCTGCTCCAGGACAGTTTCTCATACTAGGtgTACTGAATGAGTTTATTCTTAAAAATCCCACCCTGGAAAGCAAGAAGGACCAGCGAGAGCTACAGGATGTTACTCATAAAATCGTCGAGGCTATTGGGACGATTGCAGGTTCATCGCTAGAACAGACCACATGGTTGAGGAGAAACCTGGAGGTCAAACCTTCTCCTCAGATCATGGTGGAAGGCACTAGTCTGGAGGCTGATGTAGAAGATTTAATGCAAACAGTGATGGAGGCTTCCAGCTTCACTCCGTCTGTGTACAGTGTCCATGCTCTCACATTGCTGGCTGAGGTGCTGGCTCATCTATTAGATATGGTCTTCTACAGTGATGAGAAAGAGAGGGTGATTCCTCTCCTGGTCAACCTTATGCATTATGTTGTGCCCTATCTGCGCAACCATAGTGCTCACAATGCGCCCAGTTATCGTGCATGTATCCAGCTGTTGAGCAGCCTCAGTGGATATCAGTACACCCGGAGAGCCTGGAAGAAGGAAGCCTTTGACCTGTTTATGGACCATACATTTTTCCAGATGGACTCTTCCTGCGTCAGCCACTGGAGAGCAATCATAGACCACCTGATGACTCATGACAAAACCACATTCAGGGACCTAATGACCCGAGTTGCTGTGGCTCAGAGCAGCTCTTTGAGTCTTTTCACCAATCGAGATGCAGAGCTTGAGCAGAGAGCCATGCTACTCAAACGCCTGGCCTTCACCATCTACAGCAGTGAGGTGGACCAGTACCAGAAGTACTTGCCAGACATCCAAGAGCGTCTTGTGGAGAGCCTCCGACTCCCTCAAGTGCCCATCCTCCATGCTCAGGTCTTCCTCTTCTTCAGAGTGCTGCTATTGCGCATGTCACCTCAGCACCTGACCTCACTCTGGCCCACTATGATCACTGAGCTGGTTCAGGTGTTTTTACTCATGGAGCAGGAACTCACTGCAGATGAGGACATCACTAGGACTTCAGGGCCCTCGGTTGCAGGGCTTGAGACAACATACTCAGGGGGCAATGGCTTCTCTACCTCCTACAACAGCCAGCGCTGGCTCAACCTCTACCTGTCTGCCTGCAAGCTGCTGGATCTGGCCCTCGCTCTGCCCTCTGAGAGTCTGCCTCAGTTCCAGATGTATCGCTGGGCTTTCGTCCCAGAAGCCTCTGATGACTCTGGTCTGGAAGTCCGCCGACAGGGGACCCATCAGAGAGAGTTCAAGCCCTATGTTGTCAGGCTGGCAAAGCTGCTAAGAAAAAGGGCCAAGAAAAACCCAGAGGAAGACTGCTCCACACGCACTTTGTCCTGGGAGCCCGGACAGCTTCTGCTCACCCTTTACGTGATCCGCAGCATGGAGCAGCTCCTCCCTTTCTTCAACCTCCTCAGCCAGGACTTCAGCAGCAAAGGCAACAGCCGCTCAGGACCATTTCACAGCCCTACTCCCAGAGACGGACCATTCCCTGGCAAGGATGGCAAACTGGAGAGCCAGAAAGTTTTCTGGAGCCGGGCCAGACAGAACATTGAGGAAATGGTTGAGAAGGACTTCCTCGAGGGCCTCATCAAAACGTGACCTGATGTGAGCGAATAAAGGAACTATTGAGCAAAAACACTAACACCTCACCTTTTAAACATGGAAGAgaacaaaaaaaagatgtttgtacattttttgcttttctaattaatgtatttttccCAAAAGCTATACTATTTAATTTAAAGTCTTTTACTTGTAAATATGGCCAGCTGTGAtgatttctttcatttatttgaacCCTTAGGATAGTATGATGATACTGTGCCATTCCATATTGTGGTGACTTGCCTAATAAAGAGACATATCATGTGAATTTAAAACA

Function

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-65 Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1A (DOP1 leucine zipper like protein A).

Ensembl:

ensembl_id ENSDART00000166617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022194 lncRNA downstream 2517 33040999 ~ 33060053 (-) True XLOC_010849
TCONS_00021229 lncRNA downstream 86654 32888037 ~ 32975916 (-) True XLOC_010848
TCONS_00022193 lncRNA downstream 242805 32753486 ~ 32819765 (-) True XLOC_010847
TCONS_00022192 lncRNA downstream 242996 32753486 ~ 32819574 (-) False XLOC_010847
TCONS_00022191 lncRNA downstream 243040 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00022195 lncRNA upstream 463465 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA upstream 469599 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021241 lncRNA upstream 485470 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00021242 lncRNA upstream 485470 33582868 ~ 33592106 (-) False XLOC_010853
TCONS_00022196 lncRNA upstream 490417 33587815 ~ 33592580 (-) True XLOC_010853
TCONS_00021230 mRNA downstream 3301 33005688 ~ 33059269 (-) False XLOC_010849
TCONS_00021232 mRNA downstream 3324 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021231 mRNA downstream 3324 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021228 mRNA downstream 61417 32843315 ~ 33001153 (-) False XLOC_010848
TCONS_00021226 mRNA downstream 86559 32832213 ~ 32976011 (-) False XLOC_010848
TCONS_00021236 mRNA upstream 4453 33101851 ~ 33105677 (-) False XLOC_010851
TCONS_00021238 mRNA upstream 7190 33104588 ~ 33104944 (-) True XLOC_010851
TCONS_00021243 mRNA upstream 548323 33645721 ~ 33650578 (-) True XLOC_010854
TCONS_00021245 mRNA upstream 675504 33772902 ~ 33816082 (-) False XLOC_010857
TCONS_00021246 mRNA upstream 676249 33773647 ~ 33817828 (-) False XLOC_010857
TCONS_00021210 other downstream 412766 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 488334 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 858141 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 898775 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 942967 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021237 other upstream 6485 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 418368 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 652669 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1202881 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1204779 34302177 ~ 34305977 (-) True XLOC_010862

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10015409_10036875.mRNA True 7912 mRNA 0.51 38 CI01000027 10015141 ~ 10036875 (-)
bowfin (Amia calva) AMCG00004003 True 8041 mRNA 0.53 37 CM030121.1 29082093 ~ 29108404 (+)