RNA id: TCONS_00021290


Basic Information

Item Value
RNA id TCONS_00021290
length 1131
RNA type processed_transcript
GC content 0.39
exon number 6
gene id XLOC_010875
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35821321 ~ 35824708 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctatctctgttaacacatttgtatttgtttgattcaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAAAGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGAAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaacaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171913

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022205 lncRNA downstream 159769 35659889 ~ 35661552 (-) True XLOC_010874
TCONS_00021282 lncRNA downstream 394261 35417807 ~ 35427060 (-) False XLOC_010872
TCONS_00021278 lncRNA downstream 406693 35409606 ~ 35414628 (-) True XLOC_010871
TCONS_00022204 lncRNA downstream 901088 34915567 ~ 34920233 (-) False XLOC_010868
TCONS_00021266 lncRNA downstream 935094 34875441 ~ 34886227 (-) True XLOC_010867
TCONS_00022206 lncRNA upstream 197217 36021296 ~ 36021844 (-) True XLOC_010877
TCONS_00021816 lncRNA upstream 239360 36063439 ~ 36070293 (-) False XLOC_010878
TCONS_00021817 lncRNA upstream 239360 36063439 ~ 36073252 (-) False XLOC_010878
TCONS_00021819 lncRNA upstream 574426 36398505 ~ 36424101 (-) False XLOC_010881
TCONS_00021818 lncRNA upstream 574426 36398505 ~ 36424101 (-) True XLOC_010881
TCONS_00021287 mRNA downstream 234910 35572759 ~ 35586411 (-) False XLOC_010873
TCONS_00021286 mRNA downstream 234920 35556838 ~ 35586401 (-) False XLOC_010873
TCONS_00021288 mRNA downstream 234920 35581218 ~ 35586401 (-) True XLOC_010873
TCONS_00021285 mRNA downstream 235947 35555029 ~ 35585374 (-) False XLOC_010873
TCONS_00021284 mRNA downstream 242121 35555029 ~ 35579200 (-) False XLOC_010873
TCONS_00021292 mRNA upstream 120143 35944222 ~ 35975254 (-) False XLOC_010876
TCONS_00021293 mRNA upstream 120615 35944694 ~ 35952789 (-) False XLOC_010876
TCONS_00021296 mRNA upstream 214051 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021295 mRNA upstream 214051 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021297 mRNA upstream 248250 36072329 ~ 36093776 (-) True XLOC_010878
TCONS_00021283 other downstream 397321 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021280 other downstream 400412 35415589 ~ 35420909 (-) False XLOC_010872
TCONS_00021271 other downstream 726361 35094846 ~ 35094960 (-) True XLOC_010869
TCONS_00021263 other downstream 1255683 34557016 ~ 34565638 (-) False XLOC_010866
TCONS_00021294 other upstream 121305 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021301 other upstream 783962 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other upstream 784615 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021311 other upstream 990144 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 1332926 37157005 ~ 37157121 (-) True XLOC_010894

Expression Profile

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