RNA id: TCONS_00000182


Basic Information

Item Value
RNA id TCONS_00000182
length 7128
RNA type mRNA
GC content 0.48
exon number 62
gene id XLOC_000093
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8442071 ~ 8507230 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTATTCTATAAGGAGCCTGCCTACTGTCAGCTACAGAGTGAAAAGAAAAGGGGATGGTACTGAGGACATGACACAAATGGAACAGCTTACTGAGCCTGCAGTACTGATAAACCTGAAGATTCGCTTTGATCAAGAGCTTATATATACCTACATTGGCAGTATTCTGGTATCTGTGAACCCATACCAACTTTTTAACATCTATGGCACAGATATGGTTCTGCAGTACGAAGGCCATGCCATGGCAGATAACCCACCtcaTCTCTTTGCAATTGCAAACGTTGCCTACACAACAATGATGGACATCAAACAAAACCAGTGTATCATTATCAGTGGGGAAAGTGGTTCTGGAAAAACAGAAGCAACCAAACTGGTTCTGAGGTACCTCACTGCAATTCACCATAAGAGAAACATTACACAACAGATTCTAGAGGCGACTCCTCTGTTAGAGTCATTTGGGAATGCTAAGACTGTCCGAAATGATAACTCCAGTCGCTTTGGAAAGTTTGTGGAGATCTTCTTGGAGGAaGGGGTGATCAGTGGTGCCATAACCTCGCAGTATCTACTAGAGAAGTCCAGGATCGTTTTTCAGgcCAAAGATGAGAGAAACTACCACATCTTTTATGAGATGTTAGCTGGACTTCCTTCTCACACGAAGCGGGCCTTCTATCTACAAGAAGCTGAAACCTACTACTACCTGAACCAGGGTGGTAATTGTGGGATCACTGGAAAGGATGATGGGGAGGACTTCAGGAGGCTACAGAGTGCCATGGACATTCTTCACTTCAGTACTGAAGACCAGAGCAGCATATTCAGAGTGCTGTCATCCATACTTCACCTAGGAAATGTCTTTTTCCACAGAGTGGAGACAGAAGTGCAGGAGACGGCCGGTGTGGTGAGCACTCAAGAGATTCGTGCAGTAGCAGATCTGTTGCAGATTTCTCCAGAGGGTCTGCAGAAAGCCATCACCTTCAAAGTGACGGAGGCAATGAGAGAGAAGATATATACTCCACTCTCAGTAGAAAGTGCCGTGGATGCCAGAGATGCAGTTGCCAAGATCCTTTATTCCTTGCTCTTTAACTGGTTGACAGATCGCATCAATGGTCGGGTCTACCCCAGAAATGAGGCGCTGTCCATATCTTTATTGGATATATATGGGTTTGAGAGTCTGGTTTTCAACAGCTTTGAGCAGCTCTGCATCAACTATGCCAATGAGACCCTGCAGTTTTTTTTCAGCAAAATCATTTTCAAACAGGAACAGGAAGAGTACATTCGAGAACAAATCAACTGGAAAGAACTGACATTCACTGACAACCAGGCGTGCATAGACCTCATCTCTGCAAAGCCTCATGGTTTACTCCGCATCCTTGATGACCAGAGCTGCTTTCCACAGGCCACTGACAATACCTTCCTTCAGAAGTGCCACTATCACCATGGAAACAACCCTCTTTACTCCAAGCCAAAAATGCCACTGCCAGAGTTCACTGTCTATCACTATGCTGGTCGAGTAACTTACCAGGTCCATAAATTCCTGGATAAAAACTTCGATCAGGTTCGGCAGGAAGTGTTGGATCTGTTTATGCAGAGCCAGAACCGAACGGTGTCCAATCTCTTCATAAAGCATTCTGAGATGCTGAACCAGCAAAAAGGAGCGATGAACAGGAGCAGCACAGTGACCCGGAGATATCAACCCTCAACCGTGGCCGCCAAGTTTCAGCAGTCATTACAAGAGCTCTTAGACAAGATGGAGAGGTGCAACCCATTTTTTGTGCGCTGCATAAAGCCAAATAATAACAAGCACCTCAAAGTAAATGACCAATGTGTTTCCAGGTACAAAGCTCTGCTGGGAATGAAAAAGCCACCACCTTCAGATGGCGATAACTGTGTCATGATGTTAACGAAGCTCTGTCCAATCAACAAAGGAGATTATCAAGTGGGTGTGTCAAAGctcTTTCTAAAAGAGGAGGTGTATCAGCTGTTGGAGAGTAAACGTGATCGTGTGATGCATATAGCTGCACTGACCCTTCAGCGTTACGTACGGATGTTTTTTGCCCGGAGGAAATTTCTTAAGTTCCGTTTGACTATGACGCATCTTCAGGCTCACTGCAAAGGCTTCATGGCCAGGCAACGATTTCTACGGATGCGTATAAACCTAATCAGGCACCGCGCAATGATCCGACTTATCGTCAATCGCAAAAGATACATCAGGGTATGTTTAGTTTGTGTTTCTTCTTTTCTGAAGGAGCGAATAAGCAGGGAGGTGGTAAACGTGACTCAGCTGGTTATTCCTGCGGAGCTGGGAGGATTGTTACAGGCCACAGCAGgTGGTCGGGAGCGTCATTCAGACTGCTTGGCTTTGGTTCAGGCTCCTAGAATACAGACTGACCCTCAGCTCACTCTTCCACTCGATATCAACAACCATTTGATGACCAAATACATCCGCACACATTTCAGGGAATTGCTGTTTGGGATGCTAACAGCACCGCTGGAGAACTCACTGACCCGTTTAGAAGATGATTTGAAACAAGACGCTGTTGATGTGTTCATACTGATTTTGAGGTTCATGGGAGATCCGAATTTGAACGGAGCTCAGGAAAACCTCTTTGGAAATTATATCATTCAGAGAGGCCTTGCCACTCCGCCAATCAGAGATGAGATCCTAGCTCAGATAGCCAATCAGGTGTGGCGGAATGAAAACAGTAGAAATGCCGAGAGAGGCTGGTTGCTGATGGCTGCCTGTTTGAGTTCATTTGCCCCGTCTGAGAAGATGGAGAAATATCTGCTGAAATTTGTGTCAGACTACGCTCTGAATGGCTTTAAGGCTCTGTGCCAACACAAACTCCTCCAAGCCATGCAGAAATCTTACCTGGTCCCTGAAGCCTCTCGAACATACCCTCCATCACTGCTAGAGTGGACTGCCACACGCAAGAAGGCACACATGGTGCTCCAGGTGCACTGTTTTGATGGTGTGTCTTTCCTGTGTCCTGTCCATTCCTGGACCAACGGAGAGGGCCTTGCTGGAGATGTTCTACAACAcagAGGCGTGTCTGCTGAGAGCCGATGGGGTTGGTCAGTCCTGATGAAGGAGCCTGCGCAGTGGGTGGAGCTAGAAGGTCACGATTATGTTCTggatctggtgtgcgacctggaGCTGCTTCCAGACTTCCCTAAACAGAAAACATACTTCATCATCTCTACTGAAGACCCCAGCAAGGCTCGACCTAACGCCAGCATAAGTCTTTTTGGCAGTGGATTTGACGAGGATGAGGATGGGCCACTTTCATATGCCAACCGAATGAGCGCCGTTCCAACCAACAGTCTACCCATTTCTGAAGGCCACTACAGTCTGGACTCAGAACCATCCTATGATGCCACTCAGAGAGGGATGGATCGTTATTTGGACAGCTTGTTTGACCCAGTTCTGTCTGATGCAGCTGGGGACTTTGATGCATCAGTTTTGTCTGGTAGGATGAAGGGTGGAGGAGGTGTAGGTGGAGATGAAGCACAGCACACTGCTAAAGTCACTCCCTTAGCTGCTCTTCAGCCTGGAGCAGTGAGAGTTCTACCACCTATGCCACCTATGCCTGGTTCTCCAATCATGCCCAGTCTGCCAGCAGTACCACCTGTGCCTGTGCCAGACCAGCAGCATGCGGTGCTCGCTCAACAGCAACAAACCATCCTCAACCAGCAAGCCGTCATTATGGCTCAGCAGATGACTATGCAGGCGATGGCTATGGTGACCAGTCCAGTGTCCAGTCCACCAATGTCTCCTCTCACCAGTCCCCCAACCAGTCCTCCACCCACTCCCTACAGCACTCTTCCACCCAGCCCGTACCCCGCCATCCCTCCCAGCCCCTACGCAAACATCCCTCCCAGTCCTTACGCCCCGATGTCTGCATACAGCAGTCCACCAGTGACGCCCACACAGACCTTCGCCTCCACCCCCAACTACAACGCCAGCAGTGAGACCCTAAAGAAGAAGAGCAGCCCCCCAAACACACAGCCGCGGAGCAACACAAAAACACAGGCTACTCCATCTAAAGGCTCATTAGGGAAGAAACAAGCCCCTGCTGCACCAATCAAACTTGACAGCAGGCCTGCAAAAAGACATGCTCCAGTTGCAGTCACCGGTCCCATGCGCTCGACTCCAGCTCCTGGCACAGAGGTGGTCAAATATTCAGTCTCCAACTCTGAGCACATCGTTCCCAGCCACAACATTAAAGATATCATTAAGCAATATCAAACACCCACCCCAGAGCCTGCGCCGCTGAAACAGAAGAGAGATGGTAAAGGTTTTGTAAAGAAGAAGAACCCACATGACGAGGCAATGCAGATCCTAAAAACACAGATGGACAATCCTCCTCCTCCCCAGAGACATGCTCCCACTCCGGCTGCTGTGTCGAGAGATGAAGGCCTTAAACCAACGAAAAGCAGCAAGAAGAAAGCCCCAGAACCTCCTCTGACTTTACCACCACCTGTGTCCAGAGATCTTCCAGTGGAAACTGAGAGCATCCAAACACCGCTGCACCGGAGCGGCACTGAGGAGCATTACACATATACAAATGTCCCCTGGAAAATTTACCTTAGGAAGGAGGTCTTCTACCCCAAAGACAGCTGGAACCATTTGCTAGTTCTGGACCTCATATTCAAACAGATTGTTAATGACACATTTACAGAGGCCTGCGTGCGCATTACTAAAGAGGAGAGACAGAAGATGAAGTCCTTGTTTGCACAATATGGCATTGAGCCAAACACAGATGTTCAGGATGAGAGTGTAAAGAAAACCGTGATTGCAGCTGCCAGGGAGTCATGGGAGATTTATTTTTCCCGCCTCTTTCCTGCCTCTGGCAGTGTTGGTACTGGGGTGCAGGTGTTGGCAGTGTCACACACTGGTATCAAACTACTCAAGACTGTGAAAAGCAGCACTGCAGCTCCAGACTACTTCAGAGTGCTCCGACCATACAGTTACCTGGACATCTTATTTGTGACCATCCCCTCTCCAAACATGCTGGAGTTCAATCTGATGAATGAGAAATTGATTCTGTTTTCCGCCAAAGCTCCTCAGATCAAACAGATGGTCGATCTCTTCATCTCTCACCTCAAGAAGGACTCGGAGTATGTTGTAGCAGAGAGAAACTTCATCACAGAGGACAGATCTCTTCTGAACTTCCATAAAGGAGATATCATTCGTCTGCAGGCAATGGATGGATTAGAGGAGGgtCAGAGTTACGGCTGCGTTGTGAAGAAAAAGGTCATCTACCTCGAGGAGCTGAAGAGAGGCACACCAGACTTTGGCTGGAGGTATGGGGCGGTTCAAGGTCGGAGTGGAGCGTTTCCCATGGAGTGTGTGGTTCCTGTAGCTGCTCCTGATTTCCTGGGGCTCCCGGCAGAAAGGAGAGATGAGCCGAGAGACAGACAGGGCCGAGTGGCAGCATCAGGAGCAATCGCTCTTGCCGTGGCCTCCACTGCGGCTGCACATGAGCTAGACCCCTCACTAGAGTCTGATGGATTCGGGGATTTCGGTGACTCTGAAGCTGAAGGAAATGTTGTTTTAGACAGCCAGTACAATATGGTGGAGTTTGCCAGGAAATATTTTAGAACATCAGATGGAAGCAAAAGTGATTCATTCAGGGATAAGTCCAAAAAAGGTAAAGGAAGCAAAGACCCTGCAGAGATGGtgaaattcaacaagAACCCCATCCTAGAATCCCTCATAGACTTCACTGACCCCAACATGAACCGGGTTGCTTCTGAAATTTTCCTAGCCATAATGAAGTTCATGGGAGATCATCCTCTCAGAGGCCAATCAGAGCAGTTTGTGGTTTGCACTTTCCTGAAGTTAACGGGTGAATATGGACTGATGAAGGATGAGGCGTACTGTCAGGTCCTCAAACAGATCACAGCCAATACCAGCTCGAAACCTGACAGCTGTCAGAAAGGCTGGCGCCTGCTCTACATTCTCACTGCATTTTACCGCTGTTCTGAAGTGCTCAAGCCTTTCCTACTCAAGTTCCTACGAGACGTCTGCAGGAGTCCAGAAGTGCACTTTCATGGAATTGCTAAAACTTGTGAGCAGAACCTCAGGAAGACGTTTCAGTTCGGTGGCAGGAGTGTTTACCCCAGTAGCATGGAGCTTAAAGCCATCATgGCTGGTCGAAGCTCGAAGCGGCAGCTTTTTCTCTTTCCAGGAGGAATTGAGAGACATTTGAAGATCAAAACTTGCTCTGTGGCGCTGGATGTCATAGAGGAGTTGTGTTATGAGATGGCTTTACAAAGGCTGGAGGCCATGGATGAATACACAGTTTTCATAGTCACCAACAGAGGTCAGAATGTGCGTCCACTCAACAAGAGAGAATATATATTAGACATCGCAACAGAGGCAGAGCAGATCGATGCCAACTACAGCTTCTGGTTCAGACGGGTCATCTGGGCTCATCCGCTCAAGTTTGACAACGAACTCTGTGTCACCATGCACTATAACcAGGTTCTGCCAGACTATCTGAAGGGTCTGTTGAATATTGTACCTCAGGGAAAGATCAGCGAACAGCAGTTTAACCAGTTTGCCAAACTCGCTGCTCTTCAACACCGAGCCAAAGACAGTCTCTACACTCCTACTATTCATGAGCTGATGGAGTACATCCCGGTTGAGATTTTTGGCAGGCAGATCCCTCAGCAGTGGATGCAACTGGTTGCTCAACATGTGCATGCTGTCCAGAGCCTGAACCCTCACCAGGCCAGATCCCAGTTCCTGGGTTTGGTTTGTGCCTTTCCCATGTTTGGCTCGTCCTTCTTTTACATCCAAAGCAGCAGCAACAACACCATATCAGCACCATGCATCCTTGCTGTCAATCAAAACGGACTGCACTTCCTGCACAAAGACACTCATGAGGTGCAGGTGAAGGTGCAGCTGAAGCAGGTTCAGTCAGCTCACACACAGCGGCCCAGCGCTGGATCCAGTTACCCTTATGTAGACGTCCTTATAGGAGACTTGACCAACCACAGAGTCACGCAGTTACAGCTGGAACAGGGTCTGGAGCTGTGTCGAGTTATCGCCATGCACATCGAGAATATGCTTTCTGTCCGAGAGAAGAGACTCACTCTGCCACCCAGTGAAATCACCATGCTGTAA

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0007605 sensory perception of sound biological_process
GO:0030050 vesicle transport along actin filament biological_process
GO:0016459 myosin complex cellular_component
GO:0098858 actin-based cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0031982 vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000146 microfilament motor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0030898 actin-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-149 Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; actin-based cell projection; and vesicle. Is expressed in neuromast and otic sensory epithelium. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 3 and sensorineural hearing loss. Orthologous to human MYO15A (myosin XVA).

Ensembl:

ensembl_id ENSDART00000143547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002810 lncRNA upstream 767842 7672121 ~ 7674229 (+) True XLOC_000087
TCONS_00000171 lncRNA upstream 881217 7556999 ~ 7560854 (+) False XLOC_000086
TCONS_00000166 lncRNA upstream 887856 7546683 ~ 7554215 (+) True XLOC_000085
TCONS_00000161 lncRNA upstream 902355 7529853 ~ 7539716 (+) False XLOC_000085
TCONS_00003026 lncRNA downstream 66547 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000190 lncRNA downstream 68077 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00000192 lncRNA downstream 80000 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA downstream 80115 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA downstream 81002 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000181 mRNA upstream 38066 8314826 ~ 8404005 (+) True XLOC_000092
TCONS_00000180 mRNA upstream 43822 8304904 ~ 8398249 (+) False XLOC_000092
TCONS_00000178 mRNA upstream 278904 8110562 ~ 8163167 (+) False XLOC_000091
TCONS_00000179 mRNA upstream 282101 8111009 ~ 8159970 (+) True XLOC_000091
TCONS_00000177 mRNA upstream 452757 7988052 ~ 7989314 (+) True XLOC_000090
TCONS_00000185 mRNA downstream 1523 8508753 ~ 8516595 (+) True XLOC_000094
TCONS_00000186 mRNA downstream 14093 8521323 ~ 8532007 (+) False XLOC_000095
TCONS_00000187 mRNA downstream 14093 8521323 ~ 8532009 (+) False XLOC_000095
TCONS_00000188 mRNA downstream 14102 8521332 ~ 8529813 (+) True XLOC_000095
TCONS_00000189 mRNA downstream 27468 8534698 ~ 8540050 (+) True XLOC_000096
TCONS_00000154 other upstream 1378128 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1654267 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2256539 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 2939987 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 2991627 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 646864 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 647763 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 711418 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1544544 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1544554 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00324861_00371897.mRNA True 13977 mRNA 0.46 66 CI01000300 324566 ~ 372421 (+)