RNA id: TCONS_00021304


Basic Information

Item Value
RNA id TCONS_00021304
length 4086
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_010887
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36721230 ~ 36748374 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatTGATTTGTCTGTGGGAGAAGCATCTGTGATCCAGTGAGATGGGGAACCAACTGGCTGGAATTGCTCCATCGCAGATCCTGTCAGTGGACAGTTACTTCTCTGACATCCATGACTACGAATATGACAAAAGTCTGGGCAGTACACGATTTTTCAAAGTGGCCCGGGCGAAACACAGGGAAGGATTGGTCGTTGTTAAGGTCTTTGCTATCCAAGACCCTTCTCTACCCCTGACCAGCTACAAACAAGAGGTGGAGGAGCTGAAAATCCGACTGCACTCCTGTCAGAACTGCCTGCCTTTCCAAAAAGCCACGCTTACTGAAAAAGCAGCCATTCTGTTTCGCCAGTATGTTCGGGATAACTTGTATGACCGTATTAGTACGCGGCCTTTCCTCAACAACGTGGAAAAGAAGTGGATCGCCTTCCAGCTCCTCAATGCTGTGGACCAGGCCCATAAATCGGGAGTGCGTCACGGAGACATTAAAACAGAGAACGTCATGGTGACAAGCTGGAACTGGGTGCTTCTAACAGACTTTGCTAGCTTTAAGCCAACATACTTGCCTGAAGACAATCCCGCAGATTTTAATTACTTCTTCGACACGTCCAGGAGGAGAACATGTTACATTGCACCTGAGAGATTTGTGGATGGCAGCATGTTTGCTACAGAAAGTGACCAGACCACTCCTCTCGTAGATCTTTCTAGTAATAGTCAGAGGACCAGAGGGGAGCTCAAGCAGCCCATGGACATCTTCTCAGCTGGTTGTGTGATTGCGGAATTGTTCACAGAGGGCGTCCCGCTCTTTGACCTCTCACAACTGCTGGCTTATCGTAAAGGGCATTTCCAAACCGAACAAGTGCTGATGAAAATTGAAGATCACAGTATTCGAGAACTGGTGGCTCAAATGGTGCAGAGAGAGCCAGAAAAGCGACTGACAGCTGAAGAATACCTTAAGCAGCAGCGAGGAAAAGCTTTCCCAGAAATCTTCTACACCTTCCTTCAACCGTACATGGCCCAGTTTGCCAAGGAGACCTTCCAGTCTGCTGACGAAAGAGTCTTGGTGATCCGTAAAAACCTGGAGAACATCCTCAACAACCTGTGTAGCGGCGGGCAGACGGCGAAGGCTGAAAAACAGGAGAAAGCATCCCAAGAGTTTAGCTCATCTAAAGAACAAGGCCTGGTGGTGCTGGTGTCAGTGATCACTTCATGTCTACAGACGCTTCGATTTTGTGACTCCAAGCTGGCGGCGCTGGAGCTGATCCTTCATCTGGCAGGCCGGCTCAATGTGGAGATTCTGCTGGACAGGATTACGCCGTATTTGCTGCACTTCTGCAATGACTCTATGCCGCGTGTCAGAGCTGAGGCCGTTCGCACGCTGACTAAGGTGCTGGCGCTGGTCAAGGAGGTTCCCCGCAATGATGTCAACATCTACCCGGAGTACATTTTGCCTGGCATTGCCCACTTGGCCCAAGATGAAGCCACGATTGTCAGACTTGCTTATGCAGAAAACATAGCCCATCTAGCCGAGACAGCACTGCGTTTTCTGGAGCTGGTGCAGGAGAATAATTTGAGCTCTGAACACGATCTGAATGGAGAGGACACAGAAGAAACTCTTCATCCCAATGAAAACTATGATTCAGAGTTGCAGGCCTTGCATGAGATGGTTCAGCAGAAGGTGGTGACTTTGCTGAGCGATCCTGAAAACATCGTCAAACAGACGCTGATGGAGAATGGCATTACGCGCCTCTGCGTGTTCTTCGGCAGGCAGAAAGCCAATGACGTCCTTCTATCCCACATGATCACCTTCCTGAATGACAAGAACGACTGGCATCTCCGCGGAGCTTTCTTTGACAGCATTGTAGGTGTAGCAGCATATGTGGGCTGGCAGAGCTCCTCCATCCTGAAGCCTCTTCTCCAGCAAGGCCTGAGTGACGTTGAAGagtttgtcatttataaagctCTCAATGCTCTGACCTGCATGTGTCAGCTGGGGCTGTTGCAGAAGCCTCACATCTATGAGTTTGTCAGCGATATTGCTCCATTCTTGTGCCACCCCAATCTGTGGATCCGCTATGGAGCTGTGGGTTTCATCACTGTCGTCGCTCAGCACCTAAACATCGCTGATGTTTACTGCAAACTTATGCCACATCTTAACCCTTTCATCACACAACCCATTATACAGATTGATAAGGAGATTGTGTTGCTCAGTGTGCTGAAAGAGCCTGTAAGTCGCTCCATCTTTGACTATGCACTGCGTTCCAAAGACATCGGAAGCCTTTTCAGACACCTGTTACTCCGGCAAAAGAAGCGCAACGGCTCCATCCCAGAATGCCCCATTCCTGAGGATCCTGCAATTGCCCAGCTTCTTAAAAAACTTCTCTCACAGGGCATGACAGAGGCTGAAGAGGATAAGCTCTTGGCTCTGAAAGATTTCATGCTCAAGTCTAACAAGGCCAAAGCCAACATCATAGACCAGAGCCACCTGAGTGAAGGAGCCCACAGTGGAGTCATTGATCTCGGGACACTGGGCATCACTGGCCGACAGGTGGACCTGGTCAAGCCCAAGCAGGAGATTGAAGATAAGAGAGAGTTCATCTCTTCTGCCTCTGCTCGCAAACATACGAAACAGGACTCCAACTTGAACGAAGAGTGGAAGAGCATGTTTGGTTCTCTGGATCCTCCCAGCTCGGCATCCACGCCCTCGACGATTCCAGACAGTGGAGCCGCGCAGCCCCGGAAAACCACAGCGCTTCCTACTATTCAAGTGGTTCAGTCGATAACTGGAGCGTCCACATATCAGCGGCGCATCACCACATGTAAAGCAGAGCTGCAGCAGCTGGTGCAGCAGAAGAGAGAGCAGTGCAATGCAGAGCGCATGGCCAAACAGATGATGGAGAGCGCAGAGTGGGAAAGCAGACCTCCACTGCCAGGGTGGCATCCAAAAGGTCTTCTAGTGGCCCATCTACATGAGCACAAATCTGCTGTCAACCGAATCCGAGTCTCAGATGAGCACTCCATCTTTGCTACCTGCTCCAATGATGGAACTGTCAAAATCTGGGACAGCCAAAAAATGGAGGGCAAGACGACTACCACGAGGTCTGTGCTGACATATTCTCGGATTGGAGGTCATgtgaaaacattgacattttgCCAGGGATCGCATTACCTTGCAGTTGCATCAGATAATGGTTCCATCCAACTCCTTGCAGTCGAGGCAAACAAGCCTCCCAAATCACCCAAAGTCCAGCCCTGTCAGACAAGGTTTTTGGATCCAAAGGAGGAGGGCTGTGTGGTGGACGTACATCATTTTAACTCTGGGGCGCAGACGGTTTTGGCCTACGCTACTGTAAATGGCTTTTTGGTCGGTTGGGACCTGCGAAGCAACAGCAACGCATGGACTCTTCGCCATGATCTGCGTCTGGGCCTCATCACTTCCTTTGCTGTTGATATGCACCAGTGTTGGCTGTGTGTAGGCACAAGTAATGGCACAATGGCATGCTGGGATATGCGGTTTCAGCTACCAATTTCCAGTCACTCCCATCCAGCCCGAGCTCGGATCAGACGCCTTCTGATGCATCCACTCTATCAGTCATCTGTCATTGCAGCCGTTCAGGGTAACAATGAGGTCTCCATGTGGGATATGGAGACCGGAGACAGGAAGTTCACCCTGTGGGCGAGCTCTGCGCCTCCGCTTTCGGAGATGCAGCCCTCTCCACACAGTGTACATGGCATATACTGCAGCCCTGCGGATGGAAACCCTCTCCTCCTCACAGCCGGATCTGACATGAGAATCAGGTTTTGGGATTTGGCTTACCCTGAGAGATCATACATCGTCGCAGGCGGTGCTAACGACTCCCTCCACTGCCCTTCTGTTTTCTACAACCGCAAGATCATCGAAGGAACAGAAGTGGTTCAGGAGATTCACAGTAAACAGAAGAGCGGCTCCACCGAGGATACTCCTCGCCGAGGCCCAGAATCCCTTCCAGTGGGCCACCATGACATCATAACAGACATCGCCACTTTCCAGACCACACAGGGCTTTATAGTCACTTCCTCTAGAGATGGCATTGTCAAAGTCTGGAAGTGA

Function

GO:

id name namespace
GO:0006623 protein targeting to vacuole biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030242 autophagy of peroxisome biological_process
GO:0016236 macroautophagy biological_process
GO:0045324 late endosome to vacuole transport biological_process
GO:0005770 late endosome cellular_component
GO:0071561 nucleus-vacuole junction cellular_component
GO:0034271 phosphatidylinositol 3-kinase complex, class III, type I cellular_component
GO:0034272 phosphatidylinositol 3-kinase complex, class III, type II cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko04371 Apelin signaling pathway
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko05131 Shigellosis
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko01001 Protein kinases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050309-84 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including autophagy of peroxisome; late endosome to vacuole transport; and protein targeting to vacuole. Predicted to act upstream of or within phosphorylation. Predicted to be located in endosome. Predicted to be part of phosphatidylinositol 3-kinase complex, class III, type I and phosphatidylinositol 3-kinase complex, class III, type II. Predicted to be active in late endosome and nucleus-vacuole junction. Is expressed in head and pronephric duct. Orthologous to human PIK3R4 (phosphoinositide-3-kinase regulatory subunit 4).

Ensembl:

ensembl_id ENSDART00000085228

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022211 lncRNA downstream 110991 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00022209 lncRNA downstream 111057 36578495 ~ 36610570 (-) False XLOC_010885
TCONS_00022212 lncRNA downstream 111495 36608095 ~ 36610132 (-) False XLOC_010885
TCONS_00022210 lncRNA downstream 121887 36580443 ~ 36599740 (-) True XLOC_010886
TCONS_00022208 lncRNA downstream 141969 36578495 ~ 36579658 (-) False XLOC_010885
TCONS_00021307 lncRNA upstream 33822 36780659 ~ 36784973 (-) True XLOC_010888
TCONS_00021316 lncRNA upstream 192890 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021825 lncRNA upstream 209913 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021318 lncRNA upstream 230219 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021322 lncRNA upstream 421633 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021300 mRNA downstream 524927 36167907 ~ 36196700 (-) True XLOC_010880
TCONS_00021298 mRNA downstream 603113 36095582 ~ 36118514 (-) False XLOC_010879
TCONS_00021299 mRNA downstream 622135 36095663 ~ 36099492 (-) True XLOC_010879
TCONS_00021297 mRNA downstream 627851 36072329 ~ 36093776 (-) True XLOC_010878
TCONS_00021295 mRNA downstream 657484 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021306 mRNA upstream 19097 36765934 ~ 36798783 (-) False XLOC_010888
TCONS_00021308 mRNA upstream 61087 36807924 ~ 36834535 (-) False XLOC_010889
TCONS_00021309 mRNA upstream 61087 36807924 ~ 36834633 (-) False XLOC_010889
TCONS_00021310 mRNA upstream 67198 36814035 ~ 36834505 (-) False XLOC_010889
TCONS_00021312 mRNA upstream 154712 36901549 ~ 36905789 (-) True XLOC_010890
TCONS_00021301 other downstream 110991 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 111495 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 746470 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 896919 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 897548 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021311 other upstream 67386 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 410168 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 1815690 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 1831592 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 1835929 38582766 ~ 38629131 (-) False XLOC_010903

Expression Profile

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