RNA id: TCONS_00021307


Basic Information

Item Value
RNA id TCONS_00021307
length 288
lncRNA type retained_intron
GC content 0.36
exon number 5
gene id XLOC_010888
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36765934 ~ 36798783 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

catttaacttatttttcaggCTTGGAGAATATATGATGCTGATCACAGTGGATACATTGAAGCTGATGAGCTGAAGAACTTTTTGAAAGACCTGCTTCAGAGGGCTAAAAAACCATATGATGAGAAGAAACTAGAGGAGTACACATTGACTACGcTAAAAATTTTTGATTCAAATAAAGATGGGAAATTATGTCTGTCAGAAATGGCACGGCTGTTACCGGACAATGAGAACTTTCTACTAAAATTTCAGGGCGTAAAAATGGCCAGAAAAGAGTTCAACAAGATTTT

Function

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:1900271 regulation of long-term synaptic potentiation biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0099509 regulation of presynaptic cytosolic calcium ion concentration biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-8107 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion homeostasis. Predicted to be active in several cellular components, including cytosol; dendritic spine; and terminal bouton. Orthologous to human CALB1 (calbindin 1).

Ensembl:

ensembl_id ENSDART00000147191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022211 lncRNA downstream 170023 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00022209 lncRNA downstream 170089 36578495 ~ 36610570 (-) False XLOC_010885
TCONS_00022212 lncRNA downstream 170527 36608095 ~ 36610132 (-) False XLOC_010885
TCONS_00022210 lncRNA downstream 180919 36580443 ~ 36599740 (-) True XLOC_010886
TCONS_00022208 lncRNA downstream 201001 36578495 ~ 36579658 (-) False XLOC_010885
TCONS_00021316 lncRNA upstream 154754 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021825 lncRNA upstream 171777 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021318 lncRNA upstream 192083 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021322 lncRNA upstream 383497 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021326 lncRNA upstream 1176298 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021303 mRNA downstream 32285 36721230 ~ 36748374 (-) False XLOC_010887
TCONS_00021305 mRNA downstream 33822 36721627 ~ 36746837 (-) False XLOC_010887
TCONS_00021304 mRNA downstream 33822 36721627 ~ 36746837 (-) True XLOC_010887
TCONS_00021300 mRNA downstream 583959 36167907 ~ 36196700 (-) True XLOC_010880
TCONS_00021298 mRNA downstream 662145 36095582 ~ 36118514 (-) False XLOC_010879
TCONS_00021308 mRNA upstream 22951 36807924 ~ 36834535 (-) False XLOC_010889
TCONS_00021309 mRNA upstream 22951 36807924 ~ 36834633 (-) False XLOC_010889
TCONS_00021310 mRNA upstream 29062 36814035 ~ 36834505 (-) False XLOC_010889
TCONS_00021312 mRNA upstream 116576 36901549 ~ 36905789 (-) True XLOC_010890
TCONS_00021313 mRNA upstream 149210 36934183 ~ 36945347 (-) False XLOC_010891
TCONS_00021301 other downstream 170023 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 170527 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 805502 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 955951 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 956580 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021311 other upstream 29250 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 372032 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 1777554 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 1793456 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 1797793 38582766 ~ 38629131 (-) False XLOC_010903

Expression Profile

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