RNA id: TCONS_00021308


Basic Information

Item Value
RNA id TCONS_00021308
length 959
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_010889
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36807924 ~ 36834633 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTATCTGTTCTCACAGGACAAGTACACACTTTTCCAGGTGCTGCTGTCAGCCTGTGATTACCCGAGATCATGCACACAAAGGAAAACGCATGcTGCTGCTCGTTTGATGACTGCAAACTGACCACAGAATGGCTGCTGAGCAGGACAAGACACAGGCCGAAGATCGCCGTTGTGTGTGGATCTGGACTGGGTCTCCTGGCTGACAATGTACCCAACAAACAGAGCTTCCGCTACGAAGACATTCCCAACTTCCCAGTCAGCACAGTTCCTGGCCATGAAGGGTGTCTGGTATTTGGTCAAATAAAAGGCAAGTCGTGTGTCTTCATGCAAGGAAGGTTTCATCTCTACGAGGGCTATTCATTGTGTAAGGGCGTTTACTGTATGGTCAGTGGACCCAACTTTGAAACCATTGCTGAGGCACGCATGCTGCACATCTTGGGGAGCGACTCTGTTGGGATGAGCACAGTTCCTGAGGTGACTGTGGCCAAGCATTGTGGACTGCGGGTCATGGGTCTCTCGCTCATCACCAACAAGGTTTCTCTGGACTACAGCCGCGAGGAGAAGGTCAATCATGAAGAGGTGCTGCAGATCAGCAAAATGAGAGCAGAGATGCTCCAGAATGTGCTCATAACCTTTATTGCTCGCTCTCACCAAGTGGAGGCCATCAATGACAACAGCTGTATGTACTCCAATGCTGTGTAGGGTCAGTCAAAGCAGCCGAATCAAGAATGATGAGGCAGTACAGTATAGTATACTACAGATTTGAAATGCACCATGTTGTGGCTATTTTGCTTTATTTGCTTGGTTGAATGTGTAAGAATGTGTTTTGGGGAAGGGTTGATTTAGCTTCacattgtgttgtgttgttaCAGTAATGTATTTTCTTGCATTTTCAATGTGAAAgataaacaatgtaaatgaacatTGTTGAATTAAATTGTCTCCCTCTgttgaaa

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1887 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDART00000139588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021307 lncRNA downstream 22951 36780659 ~ 36784973 (-) True XLOC_010888
TCONS_00022211 lncRNA downstream 197288 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00022209 lncRNA downstream 197354 36578495 ~ 36610570 (-) False XLOC_010885
TCONS_00022212 lncRNA downstream 197792 36608095 ~ 36610132 (-) False XLOC_010885
TCONS_00022210 lncRNA downstream 208184 36580443 ~ 36599740 (-) True XLOC_010886
TCONS_00021316 lncRNA upstream 105192 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021825 lncRNA upstream 122215 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021318 lncRNA upstream 142521 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021322 lncRNA upstream 333935 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021326 lncRNA upstream 1126736 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021306 mRNA downstream 9141 36765934 ~ 36798783 (-) False XLOC_010888
TCONS_00021303 mRNA downstream 59550 36721230 ~ 36748374 (-) False XLOC_010887
TCONS_00021305 mRNA downstream 61087 36721627 ~ 36746837 (-) False XLOC_010887
TCONS_00021304 mRNA downstream 61087 36721627 ~ 36746837 (-) True XLOC_010887
TCONS_00021300 mRNA downstream 611224 36167907 ~ 36196700 (-) True XLOC_010880
TCONS_00021312 mRNA upstream 67014 36901549 ~ 36905789 (-) True XLOC_010890
TCONS_00021313 mRNA upstream 99648 36934183 ~ 36945347 (-) False XLOC_010891
TCONS_00021314 mRNA upstream 100028 36934563 ~ 36945900 (-) False XLOC_010891
TCONS_00021315 mRNA upstream 102583 36937118 ~ 36945729 (-) False XLOC_010891
TCONS_00021317 mRNA upstream 139988 36974523 ~ 36979592 (-) False XLOC_010893
TCONS_00021301 other downstream 197288 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 197792 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 832767 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 983216 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 983845 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021319 other upstream 322470 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 1727992 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 1743894 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 1748231 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 1792021 38626556 ~ 38631969 (-) True XLOC_010903

Expression Profile

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