RNA id: TCONS_00021825


Basic Information

Item Value
RNA id TCONS_00021825
length 1121
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_010892
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36956750 ~ 36959179 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAGAGCTTTTTTGTACATATAACAATCCAAGCAACTGCTTAATCAGGTTTTATTTAACCTTAAGCTGTTAATAACCTATAATAATTAAGTTACCTACAAGATAACAGGGTCAATAAATACTCGAGTTTAAAAATATCAGATGTATACTGGGATAGGGACATGTTTTCAATTCTTGCCTTGGAATTTTGTCTGAAATTTGTCCAAACTTTTATTCAAAAAAATTGTTCTGGACATGCCCAATAGATAGTCTCTAAAAGGGACAAcctctaaataaatatattttttttataaaacatttatgtcAATAGCATATCTTTTAGGGAGTTTAGAAATTCACCAAAGATCACAGTGACCTCTTTTAATATCAGGTTTTCTTTTTACTCAATTGATTATAATAGTGAATTACTCATACTACCCCAGACATTTTATACATTATAGTAGCAAAAATCACtagcaaaacaagaaaatgaTGTCTAATGGTGCTTCAGAAAACTGTCTGTGCAACATTTATTGCAAataatttacaaatgttttaaattcttGACTTGGGCTCACTGATGGAGCTACACCAGAAGACCCACTGAGCCCAGAGGTGGAGTTGCACCAGGAGACCCACTGAGCAcagaggtggagctgcaccaggaggcCTACTAAGcccagaggtggagctgcaccaggagacctCTGAACACAGAGGTGGAGCTGCACTAGGAGGCTTACTGAGCCCAGAGCTGGAGCTGCACTAGGAGACTCACTGAGCCCAGAGCTGGACCTGCATGTTGAGCAATTACAGTCACAAatttatattttaaaatcttgtCGGGTTTACTGGTGGAGCTGCATCAGGAGACGCACTGAGCCCAGAAGTGGAGCTGCACCCCAAGACTCACTGAGcccagaggtggagctgcaccGAGAGACCCACTAGTGTAGCTAGTAGTGTAGCTGCATGTAGAGCTATTGTAGTTGCACACACAGTACAGGAAGAAAAAAAGGCGCAAGAGTCAAGgtcattaaacacatttttctgAATTACTATCTGGTATTCTTTAACTTTCATGCATGAATTATAGAAGACTTAAGTTACAGCTGAGTAATGggcagttcattctgcagtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021316 lncRNA downstream 14797 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021307 lncRNA downstream 171777 36780659 ~ 36784973 (-) True XLOC_010888
TCONS_00022211 lncRNA downstream 346114 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00022209 lncRNA downstream 346180 36578495 ~ 36610570 (-) False XLOC_010885
TCONS_00021318 lncRNA upstream 17877 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021322 lncRNA upstream 209291 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021326 lncRNA upstream 1002092 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021332 lncRNA upstream 1155454 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00022213 lncRNA upstream 1239734 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00021314 mRNA downstream 10850 36934563 ~ 36945900 (-) False XLOC_010891
TCONS_00021315 mRNA downstream 11021 36937118 ~ 36945729 (-) False XLOC_010891
TCONS_00021313 mRNA downstream 11403 36934183 ~ 36945347 (-) False XLOC_010891
TCONS_00021312 mRNA downstream 50961 36901549 ~ 36905789 (-) True XLOC_010890
TCONS_00021309 mRNA downstream 122117 36807924 ~ 36834633 (-) False XLOC_010889
TCONS_00021317 mRNA upstream 15344 36974523 ~ 36979592 (-) False XLOC_010893
TCONS_00021320 mRNA upstream 207393 37166572 ~ 37470042 (-) False XLOC_010895
TCONS_00021321 mRNA upstream 209083 37168262 ~ 37372613 (-) False XLOC_010895
TCONS_00021323 mRNA upstream 241985 37201164 ~ 37415797 (-) True XLOC_010895
TCONS_00021324 mRNA upstream 988163 37947342 ~ 37964325 (-) False XLOC_010896
TCONS_00021311 other downstream 127565 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 346114 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 346618 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 981593 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 1132042 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021319 other upstream 197826 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 1603348 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 1619250 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 1623587 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 1667377 38626556 ~ 38631969 (-) True XLOC_010903

Expression Profile

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