RNA id: TCONS_00021320


Basic Information

Item Value
RNA id TCONS_00021320
length 3971
RNA type mRNA
GC content 0.38
exon number 13
gene id XLOC_010895
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37166572 ~ 37470042 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gatatttaaaaagaaatgcagCATGCGACATCAATTTGAATGTAAATTGTGCTTGCAAAGACATTTGGCGCCAAACAACCGGAGGTGCGCTTGGAAAACGCGCTTCTGCTTCTCGGTGCTCCTCCAGCGTTTGGCTCGTGGGCGGACACCTGCTCCACGCGCTCAGACTCCGGCTTCTCCAGCTCGAGGGCGGGGAGTGGGAGGCTTCTGATGCTAAAGCTGTTCCTCATGGAAACCGTCGAAACCTGACAGAAGCAGGGAGAGCAAATGTTACGGGAAAACATGTCGTCATAGCACCAGACGCAGCTTTTCATGTGAGCAAAGGATGCAGATTGATCAGGTGGGCAACCTGTGACATGTAAACAGGGCGAAGCGTGAACTGTTTCCAGCATGAAGGATAGGAAGCACACACTTTTCAAACGATGAATTATGTGTATTTCTACACCATGTGCTCTGCAGCTTTGTTGGCAGAAATTCAATTAGAACAAAAACAGATACTTTTGACTTTTTTGTTCAATCGTCCACACATTAGGGTGTCCAAATAACTCATATCCAGGCCTTTTTGTTTTGCCCAAGGATAGCAGCTGGGAAAACCTGATTGCGAGATGTGAAAAGAAGGCCTACCAGGAACCTATTttttgccCTTGGCTTGGACATCACAGCAGCAAAAAACCCTCTGATGTGAGATTGAAGGAGAAAAATGTGTTTCCATGAGCAGGATCATTAGTCTCTTTTGGCTGCTGGAGAAATTATTGGAGGACCCAAAATGTCTTACGGATCCATCGATGCGGGCTCTTTTGGAAGCAGAAATCCATTTGGTGGGCCTACAAGGCAGGGATACCAGCCAGTAGCTACACAAGTCAGTCCCTCAGAGCTGCAGGACGTGTTCCAGGAAACCTCCTCGAACATCTTTCAGATCAATGCTAACGTGGTCACACTAGAGAAGAACCTGCAATCGCTGGGAACATCCAGAGACACAGCAGAGCTACGCCAGAGTTTgcATTCCACACAGCAGCAGACCAATAAAGTCATAACAAGCACAAGCCAACTTGTTAAACAACTCACTGACATCATCAGCGGATCCTCACGGCAAGACAGGCTCCGTCTGACGAGACTCAAAACAGAGCTGTCAGATTCTGTCCAGCGATATGGAGAACTGCAGAAGAAAATTGCTGATCGTTCGAGGGCCCTGCTTCCTCCTGCACAAAAGGACAGaaaacagAGCGTCCAGACTCCATTCAGTGAGTTGGTTGAAGAGGGGCCGCTATTCGGAGCAGGTGAGAGCACTGAGGGAGATGTACAAGCGTTCCTGTCAGAGATCAGTGAAGAAGATGTGGAGATCCTGAGACAGAGAGAAGAGGCTCTTCTGCAGATTGAGAGAGACATGCTGGACGTTAATCAGATTATGAAGGACTTGGCCAGCATGGTGCATGAACAAGGAGACACCATAGACAGCATTGAAGACTACATTCAGACCACTTCATCGCACGTGGAAACAGCAAATCAAGAGCTCGCAAAAGCCAGCCATTATCAGAGGCAGCTGAGGAGGAGGAAGTGTTTTCTGCTGATCGGGGGACTGCTGTTGCTTACTCTGCTGATCATCATCATCGCAGTCTCTGCCAGAAAATGAGAACAGGACCACAGAGTTTCTCTTCTCATTTTCCGGCAAAGCAAGAGTCTCTACATCAAGTCCACCTTCGCTCACTTCtactcttctttttttctgtctaaaTCTCTCTCAGATTGAGTGCTTTttctgtgtatgcatgtatgggtgtgtggggtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgttaatgttcATTAAAGAGTCTATTTTTAATCAGTGCTTTGTACTGTAATGTGCAATTAATTGCTCTTTACCTCTTCAAAGTGGATTCCAATCAAAGAACAAAATCCAAATAGACTAAATGTTTCTGTGGGCTTTTATGCCAATGTTAGGATCTGTTTTCCATAATTTATTGCTGATTCTTGAGTGCTTTTACTTGCCTATAATTCATTTCGCATTAATACCATGTGATATAGAAAAAATGATGTGTACTATGTTTAAATCATTAACAAATCTTCAGTAAATTAATGACGCAACTAGATGTGTCAAATTGATTTTAATGCTATTTATtgtataatagtttttatttaattttgtatttataatttgtttttttttacttttaatttgaatcatttaaaatgaataaaataaaaaaatataagcaTTTACTTCATAGTTTATGTGGCAGAAAAATCATCTTAAGTtgtgacaaaaataaaagcacaatACATAAAAAGTGTGTTTGTCTCAAAGGTATAGTTCCCCTAAAAGtttgctgttaatttatttatatatttattatataaaaagatAAGaggaaaagcaaacaaataaaaactctcctactatatatatatatatatatatatatatatatatttttttttttttttttttttttttcatcattaaaCTGTAATAAAGCTGTCAAAATTAACAGCATTTAAAACATCCGCTTTGCAATGCAATCCACGTGTTGAATTGGTCGCATGACTAAATCACATGACTAAAATGTGTCATTGTTTTCAAAATGCTCAGTTTTCACAGTCCACACAAAATGGTGTTTTCAGATATATCCCTTTagacagcgttttcaaaaagatatGTTTTCGTTTCCTAACAATGACATTAAAATGAGGAGAAAAATATGCAGTTTTAAACAAAAACgtattagtgtggacatggcctgaTAGTGCTGATAGTACCATTGACATTCATGACATTCTgtcctgtcgccatcttgtgaatAGACAACGTTAACTGTCTTTGGTTCGTTCAGTATAGCAAGCTAATGGCCACCAatgcgctgtctctcagaaattataaatatttaaaataggcactacccTTATCAATAAactacatagttgcaatctaaacaactacattcttgcctaaaaaagcatcaaaagtacattatgttgcccaacagcaggaatatttgtcaaactgtagagtgtcctttgCCTATTGCTGTAtctgggcagagtaatacagaagggtgaagagaTGGTAGaatgctgttactggcagaatattgcacggctatcaaccaatcagattcaagaaccagacagaaatgtataaataaaatgttctctctctctctctctctctctctctatgtatttatatatatatatatatatatatatatatatatattattggcgGGTAtctaaattaacagcaaattttctTTTACCACAGCATTTATGTACGACTACATTTGACAGACGCTGAAACATACAATTTTAAAGTAttgaagtgtttaaaataaacattgttacaTATTAACAgcaagaaaaaacaacaaattagGAAGCTAATTtgtattaagaatatttatatcATGAAGATAATAAGATGGATCCTCTATTTCATGGAAATAATATAActctttaaaatgatatatatgtTTCAAAATGATTCATTTGTAAGCCTGTAAAGTTACTCGTACATTATTAACTAACATTTTAGATGCTGTCAGTACATCAATATCATATGTTTCAgtgtttatgaaaatgtattttggtaaacctcaaaaaaaaaaaaaaaaaacgatgttgATTTTCTCTTTTGCTTCTTGTTTCAAGAATCAGTCTTGCACTAGTTCTCATATCAGCTCATATTGATCTTCTGGTACTTACACTGTGCTCAAAATAcaagtgtatatttatttttctaggGTACAATATATATAATCCATGTAATGTTGACactgtttttaggatcattctgtATAAGGCAATTTACTTGTTATgaagaaacgttcgaggttactaaagtaacccttcgttccccgaggaggggaacggaagcactataagtggatttgatttgtaaaatc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142916

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021318 lncRNA downstream 186975 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021825 lncRNA downstream 207393 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021316 lncRNA downstream 224619 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021307 lncRNA downstream 381599 36780659 ~ 36784973 (-) True XLOC_010888
TCONS_00022211 lncRNA downstream 555936 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00021326 lncRNA upstream 491229 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021332 lncRNA upstream 644591 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00022213 lncRNA upstream 728871 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00022214 lncRNA upstream 915766 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA upstream 921899 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00021317 mRNA downstream 186980 36974523 ~ 36979592 (-) False XLOC_010893
TCONS_00021314 mRNA downstream 220672 36934563 ~ 36945900 (-) False XLOC_010891
TCONS_00021315 mRNA downstream 220843 36937118 ~ 36945729 (-) False XLOC_010891
TCONS_00021313 mRNA downstream 221225 36934183 ~ 36945347 (-) False XLOC_010891
TCONS_00021312 mRNA downstream 260783 36901549 ~ 36905789 (-) True XLOC_010890
TCONS_00021324 mRNA upstream 477300 37947342 ~ 37964325 (-) False XLOC_010896
TCONS_00021325 mRNA upstream 478288 37948330 ~ 38001040 (-) False XLOC_010896
TCONS_00021327 mRNA upstream 508109 37978151 ~ 38001141 (-) False XLOC_010896
TCONS_00021328 mRNA upstream 509983 37980025 ~ 38001081 (-) False XLOC_010896
TCONS_00021329 mRNA upstream 510568 37980610 ~ 38001120 (-) True XLOC_010896
TCONS_00021319 other downstream 9451 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021311 other downstream 337387 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 555936 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 556440 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 1191415 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021337 other upstream 1092485 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 1108387 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 1112724 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 1156514 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021356 other upstream 2087744 39557786 ~ 39605661 (-) True XLOC_010916

Expression Profile

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