RNA id: TCONS_00021327


Basic Information

Item Value
RNA id TCONS_00021327
length 2454
RNA type mRNA
GC content 0.33
exon number 5
gene id XLOC_010896
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37947342 ~ 38001141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATATAAATATAGTAAGAGACAAAAAGCAGGATCTGCGCTCAGATCTCCGTCTCTCCACCAGCATGTTCACACGACTGCTCTCTCTCTGGGTGACTGGGGCTTTGCTGATGCCCCTGATCTGGGTTAACGCATCTAGCAGTGAAGATTATGAAGATGTGACACCAACACCGGATTTTGACTACAATGTTACATTCGACTACTATTTGTACAATGGCACCGAAACATCAAATGCTAATTCTGAAGTACTGGAAATTCTCCGGGATACTAAAAATCACGGGAATACGGTTTTAACGCCAGGACACAGATACTATGTGATATTAGCAGGATTGATGGCGATGAAGATCTGCCAGCAAACATCATAATGACATCAACAATGTTTAAAGATGCTGCTGATGTCATCTAAGAGGAGAGACCAGAATATCCTGCCATCGTCTGCACACAGTGACGTCAATACTGACAttaaagaaaatttttttttttttactaaagatATACGTGTTGCTGAATGTATTTTTTACCTGAAACATATCAAATGATATCAAGCTGTTTAACATGCTTTATTTGTCTATCAATTAttcaagtagggctgcacgatattgaaataaactgacattgcgatattttgtttttctgcgatatagGATGTGAATGATGTGATATATAGAGATATGAGATATGAATATGATTTCACAAGATGACTCTGTTTGGgaaaaaaagtcataattttACGTTGATTGTGATGAAATACAATAATAAGcaaattacaagcataaattAATACACTAAAGTTAATTACGTCTAGCATTGTTTGAATAATaaactaaactttaaaataaaacaaagatataaatgaaataaactgtGCTTTATGATTTTCTGGAGAATCTAACAACATTGAGGTACACAAATTAACTAATCAACTAATAAAATAACTCTTTATAtgatagtcaacatttgaagtggatcaaaccTTTCATCAACGTTGCCCTAAAACAATTCAACGTCTATTCATGCAATATataaagaaaattttaaaaaccTTTGATCTTTTCTGCCTCAAATGGTCTTCATTttagaaataattaaatataattgatctttgctaattttataaaaactttttacaaattttatcattttaagttaattcaatgggctctatgcacagctaatgtttttcagccaatgatgaccCACATAGAAATAACCTATGTGAGGATATATGCGCATATATGAAacccatatacagtatatatgcacatatatgataatatataggCTGCATTCATATAGGCAAATTTGAGATGCAAATATGTGCATATAGACCATATAGGTCTACTGTATTGCTTCTTCATATCCACATATAAGCCCACATATGTACACACAAGATATGTCTCCTATATAACTTAAATATCACTTTGGCAACTGTATACATGATGTCTagctcatattttctattatcaaggcATTAACTAAGAactaagaaaaaaatgcaaaaaacgtATGTATGTGCGAACACTTGAAATTGGGATCACATGTAATTGGTCtggaatttaactatggcaaataagtgagagCCCACAAAGAAATAACctatataaacatgttttaatataggtttttaaaatatgtgacgTATATGAAAATGgttaattttatatacagtatgtcacatatattaaaacCTTTATcaaaacatatatgtttatataggttctttccgtGTGGGGAACTTTCAGTGAAAGCCTTATgtaactattttcaatttcataaggttccttttacagcagataatgaagtaaataaaccTAAGCATCCATTtagttgttaaagcgtaaaaaaaGAGACGAACAAACGTTTAAACGCAGGCTTCGTCAAAAGCCGCAGGccagcgcagaaactccattgaaaatactggggttaaattaatttccatattttaaagacatggcccggaaaaatataatttaatgcagtgcttcttgtttggtctgatacccactttatattgcaTCTCAGGCATGCAGTGAAAAatcttagtttaaaaaaaaaaaaaaaaaaaaagaaatcagctcTTATAAGCTGCGATTTTGTATGGGACGAAAATAAACCAGAAGCCCtgaggctggctgactgaaattaaaagtctgtgtccGTATaccaaattaaaataatagttctAGACCTTTTAAAAACCTTTCACGCTTTTAGGGTTAACTTTGTTCTGAACTTTGTTTTTTGGTTAATTACAATCccaacttgacattgcagatcctgtgatgtgactattacacattcgcacattgcgatatcgatgctgaaatgatatattgtgcagccctaaatccAAGTATAATAAACATTATCCGAGGAGCTTTTCTGCAAAATGTAACCTTTGTTTTTACACTTCTCATGCTTTTGCAAAACGAAATAAAGCACATCCTTTTTAATA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006112 energy reserve metabolic process biological_process
GO:0048589 developmental growth biological_process
GO:0040008 regulation of growth biological_process
GO:0106070 regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0106072 negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0097009 energy homeostasis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031780 corticotropin hormone receptor binding molecular_function
GO:0031781 type 3 melanocortin receptor binding molecular_function
GO:0031782 type 4 melanocortin receptor binding molecular_function
GO:0031783 type 5 melanocortin receptor binding molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0070996 type 1 melanocortin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-226 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000146564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021326 lncRNA downstream 13892 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021322 lncRNA downstream 752404 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021318 lncRNA downstream 998554 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021825 lncRNA downstream 1018972 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021316 lncRNA downstream 1036198 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00021332 lncRNA upstream 113492 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00022213 lncRNA upstream 197772 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00022214 lncRNA upstream 384667 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA upstream 390800 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00021827 lncRNA upstream 801264 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00021324 mRNA downstream 13826 37947342 ~ 37964325 (-) False XLOC_010896
TCONS_00021320 mRNA downstream 508109 37166572 ~ 37470042 (-) False XLOC_010895
TCONS_00021323 mRNA downstream 562354 37201164 ~ 37415797 (-) True XLOC_010895
TCONS_00021321 mRNA downstream 605538 37168262 ~ 37372613 (-) False XLOC_010895
TCONS_00021317 mRNA downstream 998559 36974523 ~ 36979592 (-) False XLOC_010893
TCONS_00021330 mRNA upstream 14209 38015350 ~ 38067952 (-) True XLOC_010897
TCONS_00021331 mRNA upstream 108800 38109941 ~ 38118003 (-) False XLOC_010898
TCONS_00021333 mRNA upstream 310746 38311887 ~ 38333976 (-) True XLOC_010900
TCONS_00021334 mRNA upstream 452735 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021335 mRNA upstream 454285 38455426 ~ 38518270 (-) True XLOC_010902
TCONS_00021319 other downstream 821030 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021311 other downstream 1148966 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 1367515 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 1368019 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 2002994 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021337 other upstream 561386 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 577288 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 581625 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 625415 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021356 other upstream 1556645 39557786 ~ 39605661 (-) True XLOC_010916

Expression Profile

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