RNA id: TCONS_00021332


Basic Information

Item Value
RNA id TCONS_00021332
length 626
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_010898
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38109941 ~ 38118003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTCTTCATGTTGTTTACTTCTGCATGCGAGATGAAGGATCCGGGCACATCATCTGACGGAGTGAACTATGGCGCTGTCCTCGCGCTGCTGGTGATCAGCTTTGTGCTGCTGCGGAAATGGATAGCTGGTGGGGTCTGCAAAAGTCATGCTCGTCTGGATGGAAAGACAGTTGTGATCACTGGTGCCAACACTGGGATTGGCAGGGAAACAGCAAAAGACATGGCTTATAGAGGGGCTCGAGTGGTGATGGCCTGTCGGGACCTGATTCGAGCTGAAGACGCTGCTGAGTATATTCGTCGCTGTACTGGAAATGGCAATGTAGTCATCAGACACTTAAATCTGGCTTCTCTTTATTCTGTCCGTGAATTTGCAAAAGAGTTTATAGCCACAGAAGAACGACTGGACATACTCATAAACAATGCAGGTAAGACTTCATCATAGACTGATTTATAAAAGCAAGAGAAACAGAGAGATTCATCTTTGTTTTTCTGACAGGTGTGATGATGTGTCCAAAGTGTGTCACTGAAGATAGATTTGAGACACAGTTGGCAGTCAATCACTTGGGACATTTTCTTTTGACAAATCTACTGCTAGAAATGCTGAAGAGATCCTCACCCAGCCGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RDH13 (retinol dehydrogenase 13).

Ensembl:

ensembl_id ENSDART00000133279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021326 lncRNA downstream 150374 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021322 lncRNA downstream 888886 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021318 lncRNA downstream 1135036 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021825 lncRNA downstream 1155454 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00021316 lncRNA downstream 1172680 36939727 ~ 36941953 (-) True XLOC_010891
TCONS_00022213 lncRNA upstream 80944 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00022214 lncRNA upstream 267839 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA upstream 273972 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00021827 lncRNA upstream 684436 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00022215 lncRNA upstream 830675 38948644 ~ 38950147 (-) False XLOC_010907
TCONS_00021330 mRNA downstream 46681 38015350 ~ 38067952 (-) True XLOC_010897
TCONS_00021327 mRNA downstream 113492 37978151 ~ 38001141 (-) False XLOC_010896
TCONS_00021329 mRNA downstream 113513 37980610 ~ 38001120 (-) True XLOC_010896
TCONS_00021328 mRNA downstream 113552 37980025 ~ 38001081 (-) False XLOC_010896
TCONS_00021325 mRNA downstream 113593 37948330 ~ 38001040 (-) False XLOC_010896
TCONS_00021333 mRNA upstream 193918 38311887 ~ 38333976 (-) True XLOC_010900
TCONS_00021334 mRNA upstream 335907 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021335 mRNA upstream 337457 38455426 ~ 38518270 (-) True XLOC_010902
TCONS_00021336 mRNA upstream 438867 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA upstream 460482 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021319 other downstream 957512 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021311 other downstream 1285448 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 1503997 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 1504501 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 2139476 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021337 other upstream 444558 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 460460 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 464797 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 508587 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021356 other upstream 1439817 39557786 ~ 39605661 (-) True XLOC_010916

Expression Profile

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