RNA id: TCONS_00022213


Basic Information

Item Value
RNA id TCONS_00022213
length 857
lncRNA type read_through
GC content 0.34
exon number 2
gene id XLOC_010899
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38198913 ~ 38341804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttttttaacaggaacatttaatttattatacaaaGGAACATTCACAAGGAAGGTTATTCACATGATCTTAAGAGCTGGTCCATTTTACAAGTTTCAAAAGGAAAGTTTGACTCTGAAACCATAGAAGTATAAAACAGTAAAGAGAAAAGTTAAGCTGTTGGAAACATACAAGTCATCTAAATTGCCCTCGCACGGGCAAACAAATGAAAGGAAATCATAGCTTCTGCTGAAAGAAgctaaattaaaactattaagagaAGCACTGAGATCACAGGGAAATAAGACGAGGCTCATCACACACCTCAACTTCTATCAAATTaacgaaaataataataataaaataataataataaaaaagaagaagTTATTTTTTTATACCTGTACATgtgtaggaaaaaaaaacaagacttaatGTGTAGATTTTGTTTGTCATAGCCCTTTCCGTTTCTCCTGTGCAGCAGATTCTAAACAACTTCTCTCTGTTTagttagtaaaaaaacaaaaactccagTGGCTCACAGTCACAATTAAACATGGCTGCCCACCTCAGATTGAGGTCAGCTGTAAAGATGCACATTACAGTTCAGGTTAGCTGTACAATCTGCGCTGAACAAAACAACAAAGTGAAATGAAATCCACAGAAGACAAGTTGAGAGTGTAAGTATATGACATATCTGTGTAAAAGGGGCAATAAATAGTGTGTGCATATCTCTCAGTCCAACGCATTTCAGTCCAGACCTTTGGAAACTCAAAACAGTttctttatacatttattttgaccTAGAAAACAGACCGAGATCTTTTTATTAGGTCCTAATTATCTTCTGTATCAGCCGAAGATTAAAACTCTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021332 lncRNA downstream 80944 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00021326 lncRNA downstream 234654 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021322 lncRNA downstream 973166 37168470 ~ 37225747 (-) False XLOC_010895
TCONS_00021318 lncRNA downstream 1219316 36977056 ~ 36979597 (-) True XLOC_010893
TCONS_00021825 lncRNA downstream 1239734 36956750 ~ 36959179 (-) True XLOC_010892
TCONS_00022214 lncRNA upstream 44004 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA upstream 50137 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00021827 lncRNA upstream 460601 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00022215 lncRNA upstream 606840 38948644 ~ 38950147 (-) False XLOC_010907
TCONS_00021828 lncRNA upstream 607099 38948903 ~ 38949902 (-) True XLOC_010907
TCONS_00021331 mRNA downstream 80910 38109941 ~ 38118003 (-) False XLOC_010898
TCONS_00021330 mRNA downstream 130961 38015350 ~ 38067952 (-) True XLOC_010897
TCONS_00021327 mRNA downstream 197772 37978151 ~ 38001141 (-) False XLOC_010896
TCONS_00021329 mRNA downstream 197793 37980610 ~ 38001120 (-) True XLOC_010896
TCONS_00021328 mRNA downstream 197832 37980025 ~ 38001081 (-) False XLOC_010896
TCONS_00021334 mRNA upstream 112072 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021335 mRNA upstream 113622 38455426 ~ 38518270 (-) True XLOC_010902
TCONS_00021336 mRNA upstream 215032 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA upstream 236647 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021342 mRNA upstream 578324 38920128 ~ 38921745 (-) True XLOC_010906
TCONS_00021319 other downstream 1041792 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021311 other downstream 1369728 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 1588277 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 1588781 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 2223756 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021337 other upstream 220723 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 236625 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 240962 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 284752 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021356 other upstream 1215982 39557786 ~ 39605661 (-) True XLOC_010916

Expression Profile

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