RNA id: TCONS_00021335


Basic Information

Item Value
RNA id TCONS_00021335
length 631
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_010902
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38453876 ~ 38553721 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGCTATGGAGCTTACCCCATCTGTAAAGGCTGCTCGGTGTGTTCCAAGGACAACGGGTGCATGAACTGTCAGCCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTACGGCGAATGTCTTCACGCCTGTCCGTCAGGCTACTACGGCATGCGAGGGACAGAGATCAACATGATAGATGATTGTGAGGCCTGCTTCAGCAAAGACTTCTGCACAAAGTGCAAGCTTGGTTTTTACTTGCACAAGGGTCGTTGCTTTGAAAAGTGTCCGGAGGGCTTTGCTCCCCTAGAAGACACCATGGAGTGTGGAGAGGGTTGTGAAGTGGGCCAGTGGAGTGAATGGGGGACCTGCGCCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCAGAACAAGGCATATTGTGAAGAAGCCACCAAAGGACACAATACCATGTCCAACCATCGCTGAATCTAGGAGGTGCAAGATGGCAATGCGACACTGCAGAAAAGGAGGTTCGGGGAAAGGCCACCGGACCAAAGACCAGAAGAAAAAATCCAACAAGCAGAGGCTGCGCTTGCGGGCTCAGAACCAACACAGCGACCACCTCGCCTCCATTCGGGCAGGccagtaa

Function

GO:

id name namespace
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0033335 anal fin development biological_process
GO:0033336 caudal fin development biological_process
GO:0033337 dorsal fin development biological_process
GO:0033338 medial fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0033340 pelvic fin development biological_process

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-060503-667 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

Ensembl:

ensembl_id ENSDART00000131899

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022214 lncRNA downstream 60868 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA downstream 62839 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00022213 lncRNA downstream 113622 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00021332 lncRNA downstream 337457 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00021326 lncRNA downstream 491167 37961271 ~ 37964259 (-) False XLOC_010896
TCONS_00021827 lncRNA upstream 284135 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00022215 lncRNA upstream 430374 38948644 ~ 38950147 (-) False XLOC_010907
TCONS_00021828 lncRNA upstream 430633 38948903 ~ 38949902 (-) True XLOC_010907
TCONS_00021343 lncRNA upstream 481743 39000013 ~ 39005379 (-) False XLOC_010908
TCONS_00022216 lncRNA upstream 481743 39000013 ~ 39024997 (-) True XLOC_010908
TCONS_00021333 mRNA downstream 121450 38311887 ~ 38333976 (-) True XLOC_010900
TCONS_00021331 mRNA downstream 337423 38109941 ~ 38118003 (-) False XLOC_010898
TCONS_00021330 mRNA downstream 387474 38015350 ~ 38067952 (-) True XLOC_010897
TCONS_00021329 mRNA downstream 454306 37980610 ~ 38001120 (-) True XLOC_010896
TCONS_00021328 mRNA downstream 454345 37980025 ~ 38001081 (-) False XLOC_010896
TCONS_00021336 mRNA upstream 38566 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA upstream 60181 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021342 mRNA upstream 401858 38920128 ~ 38921745 (-) True XLOC_010906
TCONS_00021347 mRNA upstream 607319 39125589 ~ 39131666 (-) True XLOC_010910
TCONS_00021348 mRNA upstream 654572 39172842 ~ 39178979 (-) True XLOC_010911
TCONS_00021319 other downstream 1298305 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021311 other downstream 1626241 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021301 other downstream 1844790 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other downstream 1845294 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021294 other downstream 2480269 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021337 other upstream 44257 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021338 other upstream 60159 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021340 other upstream 64496 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021341 other upstream 108286 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021356 other upstream 1039516 39557786 ~ 39605661 (-) True XLOC_010916

Expression Profile

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