RNA id: TCONS_00021342


Basic Information

Item Value
RNA id TCONS_00021342
length 792
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_010906
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38920128 ~ 38921745 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCATTGCGTTTCTCCGTCCACCATTTTCCACCTGTGGCTGCAGACGAGTTGAAGAGGCTCCCGACTACAAGAAGTCATTTTTTGGCCTCTGGCACTGATGATGTGGAGAGGGGCATCTCAAGCACAGTCATGGGGATTTACATAATCCGAAGTTATGACAACGGGGAGCCACAGGATGTGGGAATTGTAATCAAAGGCATTAAAGTTCTGACCAACGTTGGCAGTGTCATCATGGGTTTTGTTGTGCTCTTTGGGCTCATTTATGCCCTTGATCTGAGATTTCCAGAAAACCTCAAGTACACCTTTGAGTTCATCCAGAAAATCATAATGAATCTGGATGGACACAAGCTCAATCCAAAGATACAGCAGCTGaaaatcaaattgttttcttAAAGTGAACACCagatgacaaataaataaagtttctTTACGCTTTTCGTATTTGGGATTCATTTGTCTTTTCAATCTTCTGCCATCTTTCATCTACTAAATCAACAACACTGAACCCATGGATGTTTTCCATGTGACATTTTACATTGTGGCTAAGCTACAAAAAGTAGGCATGtggacaagtaaaaaaaaaaaaaaaattggacatacaaatgcaaaataatgtttttatgatAAATGTTTTCTATGTAGCCAGGGTGATGGAGTGACTTGGTGTGATAATTGATACCCCTTACAAACTAATGGTTGATGAGGTTTTAAGTTTGGATTTCCCAAtgcaacttttttatttatttatttattatttttgggaTGCCAACATCTGCACATCAAAGCTCAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000131409

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021827 lncRNA downstream 115976 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00022214 lncRNA downstream 525570 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA downstream 527541 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00022213 lncRNA downstream 578324 38198913 ~ 38341804 (-) True XLOC_010899
TCONS_00021332 lncRNA downstream 802159 38114633 ~ 38117969 (-) True XLOC_010898
TCONS_00022215 lncRNA upstream 26899 38948644 ~ 38950147 (-) False XLOC_010907
TCONS_00021828 lncRNA upstream 27158 38948903 ~ 38949902 (-) True XLOC_010907
TCONS_00021343 lncRNA upstream 78268 39000013 ~ 39005379 (-) False XLOC_010908
TCONS_00022216 lncRNA upstream 78268 39000013 ~ 39024997 (-) True XLOC_010908
TCONS_00021344 lncRNA upstream 108138 39029883 ~ 39094534 (-) False XLOC_010909
TCONS_00021336 mRNA downstream 290920 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA downstream 310982 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021334 mRNA downstream 366407 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021335 mRNA downstream 401858 38455426 ~ 38518270 (-) True XLOC_010902
TCONS_00021333 mRNA downstream 586152 38311887 ~ 38333976 (-) True XLOC_010900
TCONS_00021347 mRNA upstream 203844 39125589 ~ 39131666 (-) True XLOC_010910
TCONS_00021348 mRNA upstream 251097 39172842 ~ 39178979 (-) True XLOC_010911
TCONS_00021349 mRNA upstream 263358 39185103 ~ 39195318 (-) True XLOC_010912
TCONS_00021350 mRNA upstream 316023 39237768 ~ 39241801 (-) True XLOC_010913
TCONS_00021351 mRNA upstream 326899 39248644 ~ 39267227 (-) False XLOC_010914
TCONS_00021341 other downstream 288159 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 290997 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021338 other downstream 336266 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021337 other downstream 357484 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021319 other downstream 1763007 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021356 other upstream 636041 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021363 other upstream 963389 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021364 other upstream 1114966 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021375 other upstream 1760183 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 2112572 41034317 ~ 41035035 (-) False XLOC_010932

Expression Profile

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