RNA id: TCONS_00022216


Basic Information

Item Value
RNA id TCONS_00022216
length 1590
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id XLOC_010908
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39000013 ~ 39024997 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGTTCTCCAGATCACCTGCCTCTAAATAGGTAGCTTGTCCTCACACTTGAAGTGCTTAGATGTCAGAGGCGAAACCCCCACGGCCTGAGGGTGAAGAAGGGCTTTGGGGTGATATCTACTCTGATGAACGTGGTGTATCTTCTCGCTCCAGTCTCCTGCTGATCAGTAGGAGTGGTGCGGAAGCCTCAGGACATGCAGCATGAAACATTATTCATCATCCAACAACAGTAAACTTCCTCCTGGCCTGCAGATGCCAAGCTGTTCTCCTAATGAGATGCATACCAGCGCTGAAGCCTGTGAGACAGATTGGGCCTCCTGCTAGTGTGGTCCACCGCGGTCACAGACCCTACACTGCCCTGCAGGCAATACGGCCCGCCTCTTCCCATCATGCTCCACTGCTGCCTTACCTTGTGCTCCACCCTCCTCTGCATGATGGACATTTTCACAGCAGGAAAGCACAAGCCGTGAATTGTCTGTCCAGGGTGGGAAAAGGCCTGAATCTTCTCACTCCAGACACCGACCCTAGGTCAGATCCGAACAGTTCCTCTCCTTTCTAAATGATGTGGAGGAGTCAGGATTTTGTGTGTGAGAGATAGTTCCTCTTCATGGTCCGCCTTGAGCAAGCCCAGCTCTGTTCACAGCCCCGCGCCTGATTAATTGTGCAGTTTTGGATTTGTGAGAGTCAGCCTGTTTTTTTCCAGATGAGAGCCACTCGGAGCAAAAACAAAGGTGACCTTGCTGTGCCACGTCGGAGCGTAATGGGTTGCTGTGCTTCATTCGTGAGGTCATATCAGCAGCACCTGCGAGGACTGTGTTGCTTGCGGAGTGTGGAATGGAGGGGAGGCCTGTGCCATTCTCCTGGCTGGCCGAGATGGCGTAATGGGAACTGCCAGCTGTGATGGTAATTACAGCACCACTAAAGAAGACGGGGGCTGTTTTTCTTCAGGGGGCTTACAGCTCAACTGATTTTTCATTTACATGTTTTAAGTAAGATGAAGGAGCTCCCCAAATGGGTTTGAGCCATGCATTAGTGAGAGTGGATACATGCCATTTTTCAAGTGTTGTTCTTTGTCACCGGCGAATTGTTTTAACGCGCCTCCATGCTTGGAACTGTTAAAGGAATGAGGTCTAGAGGAATGCTCACGAAACGGATATAAATGCTCGCTACCTCGGACCATACGTTTCACAAGGGATGGAAATATGGTTTTGATTAGTTGATAAAAAAAGCTTTGTTTATGGTGCTTAGTAAGGCAAGTATCACTTTCATTTTTAGTGATACGACCATAATTCTTGCATCAGTTGTGCGATAGTCATGGGAATGATTCTCTCAATTGCAGTTTATTGAAGAGAGGTGTGCGATTACCTTTCCAAGTGATTACACTTATTTTTATCTTGGCAAACAATGAAAAGGCAAAGAGCATGTAGACTTAAAGGAAATACCAAAGTTATATCTAATGTCTTTTCTTTTCAGAATGTTATAGGAACTTGGCGTGGGCTGAAAATTATTTAGCATGGAGTTTTTCTGTGTATATTTTCAGCAAAATGCACGGAAATGCAACTAATTTTAAAGATGTGATCACACAGGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022215 lncRNA downstream 49866 38948644 ~ 38950147 (-) False XLOC_010907
TCONS_00021828 lncRNA downstream 50111 38948903 ~ 38949902 (-) True XLOC_010907
TCONS_00021827 lncRNA downstream 195861 38802405 ~ 38804152 (-) True XLOC_010905
TCONS_00022214 lncRNA downstream 605455 38385808 ~ 38394558 (-) False XLOC_010901
TCONS_00021826 lncRNA downstream 607426 38391941 ~ 38392587 (-) True XLOC_010901
TCONS_00021344 lncRNA upstream 4886 39029883 ~ 39094534 (-) False XLOC_010909
TCONS_00021829 lncRNA upstream 5030 39030027 ~ 39041796 (-) False XLOC_010909
TCONS_00021345 lncRNA upstream 69340 39094337 ~ 39109931 (-) False XLOC_010909
TCONS_00021346 lncRNA upstream 82241 39107238 ~ 39109931 (-) True XLOC_010909
TCONS_00022217 lncRNA upstream 587897 39612894 ~ 39625362 (-) True XLOC_010917
TCONS_00021342 mRNA downstream 78268 38920128 ~ 38921745 (-) True XLOC_010906
TCONS_00021336 mRNA downstream 370805 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA downstream 390867 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021334 mRNA downstream 446292 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021347 mRNA upstream 100592 39125589 ~ 39131666 (-) True XLOC_010910
TCONS_00021348 mRNA upstream 147845 39172842 ~ 39178979 (-) True XLOC_010911
TCONS_00021349 mRNA upstream 160106 39185103 ~ 39195318 (-) True XLOC_010912
TCONS_00021350 mRNA upstream 212771 39237768 ~ 39241801 (-) True XLOC_010913
TCONS_00021351 mRNA upstream 223647 39248644 ~ 39267227 (-) False XLOC_010914
TCONS_00021341 other downstream 368044 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 370882 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021338 other downstream 416151 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021337 other downstream 437369 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021319 other downstream 1842892 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021356 other upstream 532789 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021363 other upstream 860137 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021364 other upstream 1011714 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021375 other upstream 1656931 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 2009320 41034317 ~ 41035035 (-) False XLOC_010932

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_01277792_01304615.mRNA True 2487 mRNA 0.47 13 CI01000016 1276928 ~ 1304762 (+)