RNA id: TCONS_00021348


Basic Information

Item Value
RNA id TCONS_00021348
length 1887
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_010911
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39172842 ~ 39178979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTCAGAGTGACAAACGAACGAGTAcagtgaacagtgatttaatgactTTAGCGACTTGTTTTGCGTCTCAAATGGAAAATAATAAGTCAACTTTGTTTTTTCATCGAGTTAAAAAGATCACGACTGACTTTGTCAACAATAATCATCAGAGTGACACGATGGCTTCTCCTACACCTTGTACCACGACGAGAAGCCCAACAGAAAACCCAGAGAAAAGGAGGAAAGGGAAAAAAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCAAAGCGCCCTTTCCTTAGCTGTGACCAGAGCAGAGTGGTTCCCTTTGAACCACAGTCAGATAACGACTATTTCGAGCACCTGCCTGTTCCAGGTCCCTCAAGGACCGTCGCAGCACATGCAGACCCTGAGCCGGTGTTGCTGCCAGGCCAGGTCTGTGAAGAACCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATGTGCCGAATGCAGATCGGGCCCGTCCTGAGTCCTCAACGGCCCTCACAGGTCATGTTGACACTGAGCAGATGCGTCCGCCAGTCCAGGTCTGTGAAGATCCTCAGCCCttgagtgttccgggcccctCCAATATTAAGAAAATGACGGATGCAGATTCGGTCAGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGaaaaccccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGCAAAGCTCCCTTTCCTGCATTTTACGCCACAGCCTGAGCCAGAGTCAGAGCCAGACCTTGAGTCAGTATGTCTGCCAGGCCAGGGTCCTGAGGAGGCTTCTGGGCTCACTCGTGgaCTTGATCTGACTCAGTTTGAAGTCGGAGACCTGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTTGCCCTGAAGTGCATGGTGAAGAGTCAACAGGACCGTTATCTGGACGTTGATGGTCATTCCACACCTGTGCTTGCAGAAGTGGCAATGATGCTTAGGTTGATGAAAGCTCCGCGAAGTCCAAACATCATCAGATTACACAACTGGCTTGAGATTGAGGACAACTGTGTTCTCATTCTGGAGTACGCAGAGTCATGCCAGACCTTGCTTCAGTACATCAAAGACACAGCGGACATTGAGGAAAACCAAGCACGCCAGTTAATGCGTCAGTTGATCCGAGCTATAATGTTCTGCACTGAGCGTGGAGTTTTCCATGGGGATATACACACAGCGAACATCCTGGTGACTCTACCCCGACTAGAGCTCAAATTGATCGACTTTGGATGTGCTCAGCCAATTACCCAAAAGCCTTTCAATAAAAGTGACTATCGAGGAGCTGGACATGGCATGCCACCTGAGGCTTTGAGATGTCGTGTATTCCATGCTAACCCGGCATACGTCTGGACAATAGGCATTATGCTGTATGAAATAATGCATGGACGACTGGCCTTCAATAACAGACAGTCAATAATGTTTGGCGCAATTCAGATACACCCCAGGTTATCCACAGCATGCGTGGACCTGATTTCCCAGTGTTTGATCCGTAATCCAGCTAAACGGCTACAGTTACACCAGGTAGAAGAGCACTGCTGGTTCAATCCAACGACCCCAAATCCTGTGAAGCAGTTATACAAGAGGAGaaAAAACTAAAGAAGTGAGGAGGAGAGCACCATTTCCAGACATTCACAAGACTGTTAAAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTCACTTTTCTTCAGTGTCAGTTCATGACGTGTGTTGAAGAGAGCTCTGTCCTGCGCTgtatgtgtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021345 lncRNA downstream 62911 39094337 ~ 39109931 (-) False XLOC_010909
TCONS_00021346 lncRNA downstream 62911 39107238 ~ 39109931 (-) True XLOC_010909
TCONS_00021344 lncRNA downstream 78308 39029883 ~ 39094534 (-) False XLOC_010909
TCONS_00021829 lncRNA downstream 131046 39030027 ~ 39041796 (-) False XLOC_010909
TCONS_00022216 lncRNA downstream 147845 39000013 ~ 39024997 (-) True XLOC_010908
TCONS_00022217 lncRNA upstream 433915 39612894 ~ 39625362 (-) True XLOC_010917
TCONS_00021361 lncRNA upstream 563266 39742245 ~ 39858719 (-) False XLOC_010918
TCONS_00021360 lncRNA upstream 563266 39742245 ~ 39858928 (-) False XLOC_010918
TCONS_00022218 lncRNA upstream 1157502 40336481 ~ 40338855 (-) False XLOC_010923
TCONS_00021367 lncRNA upstream 1159605 40338584 ~ 40340518 (-) True XLOC_010923
TCONS_00021347 mRNA downstream 41176 39125589 ~ 39131666 (-) True XLOC_010910
TCONS_00021342 mRNA downstream 251097 38920128 ~ 38921745 (-) True XLOC_010906
TCONS_00021336 mRNA downstream 543634 38556836 ~ 38629208 (-) False XLOC_010903
TCONS_00021339 mRNA downstream 563696 38578451 ~ 38609146 (-) False XLOC_010903
TCONS_00021334 mRNA downstream 619121 38453876 ~ 38553721 (-) False XLOC_010902
TCONS_00021349 mRNA upstream 6124 39185103 ~ 39195318 (-) True XLOC_010912
TCONS_00021350 mRNA upstream 58789 39237768 ~ 39241801 (-) True XLOC_010913
TCONS_00021351 mRNA upstream 69665 39248644 ~ 39267227 (-) False XLOC_010914
TCONS_00021352 mRNA upstream 69676 39248655 ~ 39267185 (-) True XLOC_010914
TCONS_00021353 mRNA upstream 206504 39385483 ~ 39477746 (-) False XLOC_010915
TCONS_00021341 other downstream 540873 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 543711 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021338 other downstream 588980 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021337 other downstream 610198 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021319 other downstream 2015721 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021356 other upstream 378807 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021363 other upstream 706155 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021364 other upstream 857732 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021375 other upstream 1502949 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 1855338 41034317 ~ 41035035 (-) False XLOC_010932

Expression Profile

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