RNA id: TCONS_00022217


Basic Information

Item Value
RNA id TCONS_00022217
length 1635
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_010917
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39612894 ~ 39625362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttaaatttagtttaaattgcaaccacttaccttaaaaatgtagcaaatgcaattaatatttttttcagtgtagttttaGTGGCTTAACCAGTACTTATTTAAGGGGATTTACACCTATTTAAATTTGAATACTAACAGTTCTTGACCCCagtgagctacaaaaaaaaattaggtaaaattataattattaggtgtaacaatttataataggaatgaagacactttgagctttatcTAGAATATTTTGTGCTAAAAATATGAAAAGTTATACATTGTAAAGTAATGagaaagaaatatttgtttttccatatacagAGACATGAAATCAGTCATATAATAGCCTAGAAAAAATATTCCTTAAGGCCAAGTgtctcatgagtttatatttcaaatttgatgaagataACATGCTGAAATAAGATTTCTGTAAAGTTTTCCGAGACTATATCGGTGTCCTCTCCCTCACCGTCAGAGGCACTTTCTTAAAAATGACCTTCCTAAATGAAACCAGTAACAATTatttagtttacatttacatttcatgtatctttggaaagaagattttgggttttacaatgtttaaaatgctaaaaaaaaaatcataaacaaatatataatggATGAAATTAGACCTGGAGCAATACAGAAAAGTAAAAGGTCAAAAGCCACACATCTCCTGagtatatgttttgaatttgatggcAATCTCATGCAAAATTACATTTCTGGAATTGTTTTTCTGAGGCAACGTCCTGATGCTGGCTAAGAGGTTAAAGGTGATGTGTGTAAATTATTATACAGTAGATACACTAACATAATTTACTTACTCTTTAAATGACTTGGAATATCATAAACAGTCAAAGCTCGTCACGCCAGAAAATACCCCAAATCTGTAAACTGTCAATAGGTTTACGTAACTTTCTTATTTATGCTCCAGGCTGATATCCTCTCCGCTCATCTCTGTCTTTTTCCAGCACAGTTTTCCAGGAGCTTTAGTGGGAATATCGCAGTGTTTTTCCCCCTCTTGTTTCCATTCCCCTTTTCAAGATATGAGGAACTCCGCCAGAGAGGTTGCCATGGCGTCAGCGTCCACAACAGACAAAAACAGTGAAGATTCATCCAGAGCGGCACAGCGGGCACTGCAGAGACTCAATCAGCTGGAGACCCAACACTTCACTGTTTCTGCTCAGACTGTGCAGAAGGATGATCCCCTGTGAGTTCCTGGGTAAAAGCCAGACGGGTCACCTGTTTGTCCTCAAACAGACAGACACGAGGCCACAGAGAGTTCTCCATGCATGACTGATGCATCAAAACATGTCACCTTCTGCCACTTCCGTCAGCACAAGCGCCTGTCGGCAGCCCACCGCAAGCACTCTCTACAGGGCAATAAAAACACAAGAAGAATAAACTGATTTTAAAAGGCCAATTGTCTGGTGAAAGTAGGAAAGTGTGAAGTGAAGGAAGAAGAAGGAGGGAGGGGAAGAGGAGGCCGTGTGTGTTACATGTACATACCAGAGCGGTGAGATCGAGCGTGTTCAGGACAAGGATCATTTAGAAACACATACCACTCGCTTCGGCAAACACGCACAACGCACACTTTAGTCTGGTACAACATTACAATGTTTTTCAGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021345 lncRNA downstream 502963 39094337 ~ 39109931 (-) False XLOC_010909
TCONS_00021346 lncRNA downstream 502963 39107238 ~ 39109931 (-) True XLOC_010909
TCONS_00021344 lncRNA downstream 518360 39029883 ~ 39094534 (-) False XLOC_010909
TCONS_00021829 lncRNA downstream 571098 39030027 ~ 39041796 (-) False XLOC_010909
TCONS_00022216 lncRNA downstream 587897 39000013 ~ 39024997 (-) True XLOC_010908
TCONS_00021361 lncRNA upstream 116883 39742245 ~ 39858719 (-) False XLOC_010918
TCONS_00021360 lncRNA upstream 116883 39742245 ~ 39858928 (-) False XLOC_010918
TCONS_00022218 lncRNA upstream 711119 40336481 ~ 40338855 (-) False XLOC_010923
TCONS_00021367 lncRNA upstream 713222 40338584 ~ 40340518 (-) True XLOC_010923
TCONS_00021372 lncRNA upstream 896376 40521738 ~ 40584050 (-) False XLOC_010927
TCONS_00021355 mRNA downstream 42062 39505163 ~ 39570832 (-) False XLOC_010916
TCONS_00021353 mRNA downstream 135148 39385483 ~ 39477746 (-) False XLOC_010915
TCONS_00021354 mRNA downstream 135385 39386346 ~ 39477509 (-) True XLOC_010915
TCONS_00021351 mRNA downstream 345667 39248644 ~ 39267227 (-) False XLOC_010914
TCONS_00021352 mRNA downstream 345709 39248655 ~ 39267185 (-) True XLOC_010914
TCONS_00021357 mRNA upstream 17906 39643268 ~ 39859119 (-) False XLOC_010918
TCONS_00021358 mRNA upstream 20959 39646321 ~ 39900665 (-) False XLOC_010918
TCONS_00021359 mRNA upstream 59879 39685241 ~ 39858759 (-) False XLOC_010918
TCONS_00021362 mRNA upstream 119808 39745170 ~ 39858716 (-) True XLOC_010918
TCONS_00021365 mRNA upstream 415451 40040813 ~ 40043322 (-) True XLOC_010921
TCONS_00021356 other downstream 7233 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021341 other downstream 980925 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 983763 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021338 other downstream 1029032 38578429 ~ 38583862 (-) False XLOC_010903
TCONS_00021337 other downstream 1050250 38562527 ~ 38562644 (-) True XLOC_010904
TCONS_00021363 other upstream 259772 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021364 other upstream 411349 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021375 other upstream 1056566 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 1408955 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021390 other upstream 1899428 41524790 ~ 41529013 (-) True XLOC_010940

Expression Profile

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