RNA id: TCONS_00022218


Basic Information

Item Value
RNA id TCONS_00022218
length 1495
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_010923
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40336481 ~ 40340518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAGTATGAAGAAAGCCAGTTCATACACCCATCCACATGCAGTCTCAGGCTGTCCGTGGCGACGCATCAAATCAGCAGCGCCAACCTAATTTCACCAAGAGGGACAGGTTTCATGGATTGACATGTTGATTCTGGAaaaacattccaatcagccaatcagaattaagggatctGTTCATCTTTTATGTTAAGTGTAGGCtcacggttaggtttatgcacttctacatgattgtcaTCCATTAACTATTATTCCACTCTTATTTTGGGATTAATATACAGTTATGGTTGGGGCTAGGGAACAGGTATTGATTACATTACATAGATATTAATCCAGAATCACATTGTACTTGGCAACATCATGACATGCAGCATATTAGTTTTTTACCAACCATGTTACACTAAAGACTGGAATAATGATATTGAATATTCAGCTTTgccactaaaataataaaattacacattttcaaaaatgtatctAGACAGAAAACATTTGGCACTGCTAACATATTTGACAATTCTACTGTTATTACTggttattttgatcaaataaacagtgttttaccTAACATAAATGACGTCTTACCGACTGACCGTCAACATCCATCATAAACAACTTACACATTAACACTCACGTCTtgatttgtgtttaaaagaaacagTCGGGATGTTTAGGAGTGATGTTTTTTAGCGCCGCAGTGTTTACACTTTTCGGGAAAATGACTTACAGTGTCTGCACATTAATCTGGGATAAGAGAAAGTGCTGTAACCAGATAAAGTACACACACAATACGAGCGGTCAGAGTTTGGCAGGAATCGGGGCTGATTTATTCCCTGTGCAGGCGTGTTGAATCATCCTATCATTGTATTAATCAGACTTTAGTGATTTTCCCATCATCCCTCATCTCTCTCCCGCTCCAGATGGCATTACTCATTCACCCTAAGATGACCATTGTTCTTCATTTTGGGCTGTTTTGCTTGGGAGACGTCCCTTCAGCAGTCATCACCTCCATTTAAAAGTATTCTCCATAGATTATTAAGGGTTTGATGGAGGCCAGGTTGAGGACACATTTATAAAGTTGTGAAACAGCAGAACCATCTgctgtgttgtgtgagtgctagtGTCTGGTCTGGACCACAAGATGACAGTCTTGTACAACAACTGTTTCcattttgtttttctctctttcgCACTGTCACATTGTCAAAGGTTAGTTGATATGAGGGACTCTTAGAAATGAAGctgtaaaatagatttttttcatgCCAATATTTTCttctccactgtaaaaaaataagagTTTGCTTTTTATAAGCGAAATTAAGTCTTTTCAACTTCTATTACATCATACTGACCTCAAACATTAAGTTAagaagtaaatatatatttatacacaaacatacatacatacatacatacatacagggatgggcagtatttatgatacaatattttaaatttgcattttaaattcaaaattgtattttgtaatttgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021360 lncRNA downstream 477553 39742245 ~ 39858928 (-) False XLOC_010918
TCONS_00021361 lncRNA downstream 477762 39742245 ~ 39858719 (-) False XLOC_010918
TCONS_00022217 lncRNA downstream 711119 39612894 ~ 39625362 (-) True XLOC_010917
TCONS_00021345 lncRNA downstream 1226550 39094337 ~ 39109931 (-) False XLOC_010909
TCONS_00021346 lncRNA downstream 1226550 39107238 ~ 39109931 (-) True XLOC_010909
TCONS_00021372 lncRNA upstream 182883 40521738 ~ 40584050 (-) False XLOC_010927
TCONS_00022219 lncRNA upstream 223757 40562612 ~ 40568139 (-) False XLOC_010927
TCONS_00022220 lncRNA upstream 226572 40565427 ~ 40568204 (-) True XLOC_010927
TCONS_00022221 lncRNA upstream 611013 40949868 ~ 40957630 (-) False XLOC_010930
TCONS_00021830 lncRNA upstream 618223 40957078 ~ 40957633 (-) True XLOC_010930
TCONS_00021366 mRNA downstream 181057 40138033 ~ 40155424 (-) True XLOC_010922
TCONS_00021365 mRNA downstream 293159 40040813 ~ 40043322 (-) True XLOC_010921
TCONS_00021358 mRNA downstream 435816 39646321 ~ 39900665 (-) False XLOC_010918
TCONS_00021357 mRNA downstream 477362 39643268 ~ 39859119 (-) False XLOC_010918
TCONS_00021359 mRNA downstream 477722 39685241 ~ 39858759 (-) False XLOC_010918
TCONS_00021368 mRNA upstream 14961 40353816 ~ 40373836 (-) True XLOC_010924
TCONS_00021369 mRNA upstream 87018 40425873 ~ 40459104 (-) False XLOC_010925
TCONS_00021370 mRNA upstream 87231 40426086 ~ 40426837 (-) True XLOC_010925
TCONS_00021371 mRNA upstream 148877 40487732 ~ 40508624 (-) True XLOC_010926
TCONS_00021373 mRNA upstream 255273 40594128 ~ 40841363 (-) False XLOC_010928
TCONS_00021364 other downstream 298685 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021363 other downstream 451230 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021356 other downstream 730820 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021341 other downstream 1704512 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 1707350 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021375 other upstream 343073 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 695462 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021390 other upstream 1185935 41524790 ~ 41529013 (-) True XLOC_010940
TCONS_00021392 other upstream 1196605 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021399 other upstream 1365059 41703914 ~ 41705815 (-) False XLOC_010944

Expression Profile

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