RNA id: TCONS_00022220


Basic Information

Item Value
RNA id TCONS_00022220
length 921
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_010927
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40521738 ~ 40584050 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAGCAACGTCATCATGGCAAACCTCCAGATCATCTCCACATGCACCAGAGCAGGCCTTTGCTACAGGAACAGACGACAGAGAGGATGTTATAGAAAGTTGTGGCATATATTGGCCACACCTTGTTTATCAGTAGTCTTGCAGAGTCCTGCCAGATGACATCGAACACTTTCTCAACTCAGGGATCTTAACCTTCTTACACCACTGTTCAGCGTCCCTGAGAAGCCAGTTAAACTCTAATACGCTCGCTGTGATGGGAAAGTACTCGCCGATATTTCCATCAAGCTACACGGGTGTGAAAAAAGAGGAATGTTTTCAACCTCCAGTCTCATCTTGTCCTCCTCAGCCTTCAGGCAAAAGATTTATGTTTATAATCGCTCCATGTTCAAGGCCCACCCGTGTAATGTGCATAAATGGTAACTTAATCTGTCCTATTTTTACCTCAGACCCCACCGTAGACACTTTTGTCTGACAGGCTAAAAGCGTTGTTGCCCATAAAcatctctccctccctccctccgcTAATAAAGGTGAACTGGGGCAGTCAGATTGCCTTGCACCTgaaatattcacacacatacacaatatgAGAAGGCCTGTATTTGGGCAGGCATCATGTTAATGAGGGCATTGCGTCTGTGCCAGGGGTTACAGAATCTGTAATATGGCTCCGGCAGACTGGGCCATCTGTATCAACTGAGGTACACTAGGGTCATCTCATACATAAGAGGATGTATGCGTGCCCAGTTTACACAGAGCATGAGGAGGAAATTATACTGAATTCTGATGAATGCGATTGCATTTACATCTATCATGCAAACAGATAATTAGACGTTGCATATTGAAAATGTAGAAGTAAGATTTTAACGTAGATATTATGAAAAAGACCTGAAATCTAAAAATTTGTTTGCTAAAACAAGC

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0043412 macromolecule modification biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021367 lncRNA downstream 224909 40338584 ~ 40340518 (-) True XLOC_010923
TCONS_00022218 lncRNA downstream 226572 40336481 ~ 40338855 (-) False XLOC_010923
TCONS_00021360 lncRNA downstream 706499 39742245 ~ 39858928 (-) False XLOC_010918
TCONS_00021361 lncRNA downstream 706708 39742245 ~ 39858719 (-) False XLOC_010918
TCONS_00022217 lncRNA downstream 940065 39612894 ~ 39625362 (-) True XLOC_010917
TCONS_00022221 lncRNA upstream 381664 40949868 ~ 40957630 (-) False XLOC_010930
TCONS_00021830 lncRNA upstream 388874 40957078 ~ 40957633 (-) True XLOC_010930
TCONS_00022222 lncRNA upstream 466113 41034317 ~ 41036035 (-) False XLOC_010932
TCONS_00021831 lncRNA upstream 474790 41042994 ~ 41049894 (-) True XLOC_010933
TCONS_00022223 lncRNA upstream 489712 41057916 ~ 41059329 (-) False XLOC_010932
TCONS_00021371 mRNA downstream 56803 40487732 ~ 40508624 (-) True XLOC_010926
TCONS_00021369 mRNA downstream 106323 40425873 ~ 40459104 (-) False XLOC_010925
TCONS_00021370 mRNA downstream 138590 40426086 ~ 40426837 (-) True XLOC_010925
TCONS_00021368 mRNA downstream 191591 40353816 ~ 40373836 (-) True XLOC_010924
TCONS_00021366 mRNA downstream 410003 40138033 ~ 40155424 (-) True XLOC_010922
TCONS_00021373 mRNA upstream 25924 40594128 ~ 40841363 (-) False XLOC_010928
TCONS_00021374 mRNA upstream 29412 40597616 ~ 40727455 (-) True XLOC_010928
TCONS_00021376 mRNA upstream 423707 40991911 ~ 41004731 (-) True XLOC_010931
TCONS_00021377 mRNA upstream 464757 41032961 ~ 41059919 (-) False XLOC_010932
TCONS_00021380 mRNA upstream 544142 41112346 ~ 41131578 (-) False XLOC_010935
TCONS_00021364 other downstream 527631 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021363 other downstream 680176 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021356 other downstream 959766 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021341 other downstream 1933458 38626556 ~ 38631969 (-) True XLOC_010903
TCONS_00021340 other downstream 1936296 38582766 ~ 38629131 (-) False XLOC_010903
TCONS_00021375 other upstream 113724 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021378 other upstream 466113 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021390 other upstream 956586 41524790 ~ 41529013 (-) True XLOC_010940
TCONS_00021392 other upstream 967256 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021399 other upstream 1135710 41703914 ~ 41705815 (-) False XLOC_010944

Expression Profile

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