RNA id: TCONS_00021388


Basic Information

Item Value
RNA id TCONS_00021388
length 1239
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_010939
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41505255 ~ 41515717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTtgccttattttaaagtgattgATGGTGAGATTCCAGCACAATCAGACTCAAGATGCAAGGCTTTGTGTTTGGTTTTCTTACTTTTATTTGTTGCCTCAAAgGCCTAACATGTTCAGACTGGACCATAAATGGTCAAACTAAAGTTAACGGCTCACTGGGACAGAATGTGATTCTTCCCTGCTCCTTCACACACCCTAAACAAGACACCTACACCGGCAACATCATTGTCATGTGGATGCAGGAAAACAGAAAGGAGCCTGTTTTTCAGTGTATTATGTCCAACAAAACCGACAGTCAAGACGGTAACTGCTCTCTTAAACCATCAAAGCGATTCTGGCTTCACGGTAACCCCAGGAAAAGAGACATTTCTTTGGCTATCACTAATTTACAGTTGTCCGATGCTGCAAAGTATGCCTGTAGGTTGATGCTGGATTATGATAAAGTTCAGCGCGCCACAGAGCTTATTGTCAACGCTCCAGCACGAATCCTCATCTTATCTCAGTATTTGGAGCTCACGTCTCACGCATTGCTGGTGAAGTGCATTGCCCAAGGAAATCCAGTGCCGGATGTAAAATGGACCCTATCTTCTGGGCAAAATGCTTCAGCCACAACTGAACGCCACAAGTACATGGTCATGAGCTCAGTTCAGTTCTCCGAGCAGGACGTCTTCACTTGTCAAGCTGTGAACTCACTGGGTCGAGCTCAAAAAACATTTCCACCAGATCCTCGCAGTTGTTTTGCTCCTTTGGCGGCGACTGGTGTTCTGGCGGTTGTGCTGGTGCTTGGGCTTCTGCTCTTCATTTGGGATGTGATACGAAAAAGACAAAGTGAACAAGGAGCCATGGAACAttatttaggtGCACAGCAGGCTAAAAGCTCTATCTATGAAGCTAATGAGATGGTGTATGCCAATGTCAGGACTTTACCACCTGATGCTTCGGCACAAGGCAAAATGTACTCAACATGGCCGCCATCAGAAGAAGCAAAGGCGGAGGTGAATCCCAGATTTCAGAGCCAAAGAAGGGCCACCAGCAAGGTTCGTCCCGCGACAGCTGCGACAACCCCGACAGCACCGGTGGAAAGTGAAAGatactagagagccAGCTTTTGGTAAAATGCCAGCAGTCCTCAAAGGAAGTAAAACCAAAATGGAGATATTAAATCTTACAGTCAAATCTCATGAGCAATAAACAACATTACTAGAATATGTGAATAAAATTgctatttgaattaaaa

Function

GO:

id name namespace
GO:2001204 regulation of osteoclast development biological_process
GO:0045124 regulation of bone resorption biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-281 Predicted to be involved in regulation of actin cytoskeleton organization; regulation of bone resorption; and regulation of osteoclast development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDART00000127243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022224 lncRNA downstream 396543 41103491 ~ 41108712 (-) True XLOC_010934
TCONS_00021379 lncRNA downstream 445615 41057916 ~ 41059640 (-) True XLOC_010932
TCONS_00022223 lncRNA downstream 445926 41057916 ~ 41059329 (-) False XLOC_010932
TCONS_00021831 lncRNA downstream 455361 41042994 ~ 41049894 (-) True XLOC_010933
TCONS_00022222 lncRNA downstream 469220 41034317 ~ 41036035 (-) False XLOC_010932
TCONS_00022225 lncRNA upstream 7321 41523038 ~ 41529013 (-) False XLOC_010940
TCONS_00021393 lncRNA upstream 26362 41542079 ~ 41542863 (-) True XLOC_010942
TCONS_00022226 lncRNA upstream 169151 41684868 ~ 41688975 (-) False XLOC_010944
TCONS_00021398 lncRNA upstream 173380 41689097 ~ 41699268 (-) False XLOC_010944
TCONS_00021400 lncRNA upstream 196917 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021387 mRNA downstream 1330 41495670 ~ 41503925 (-) True XLOC_010938
TCONS_00021386 mRNA downstream 17232 41468529 ~ 41488023 (-) True XLOC_010937
TCONS_00021385 mRNA downstream 17666 41467188 ~ 41487589 (-) False XLOC_010937
TCONS_00021384 mRNA downstream 39630 41413606 ~ 41465625 (-) True XLOC_010936
TCONS_00021382 mRNA downstream 39713 41345477 ~ 41465542 (-) False XLOC_010936
TCONS_00021391 mRNA upstream 16899 41532616 ~ 41535690 (-) False XLOC_010941
TCONS_00021394 mRNA upstream 69928 41585645 ~ 41667101 (-) False XLOC_010943
TCONS_00021395 mRNA upstream 70467 41586184 ~ 41646164 (-) True XLOC_010943
TCONS_00021396 mRNA upstream 169284 41685001 ~ 41714988 (-) False XLOC_010944
TCONS_00021397 mRNA upstream 170734 41686451 ~ 41717063 (-) False XLOC_010944
TCONS_00021378 other downstream 470220 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021375 other downstream 822552 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021364 other downstream 1467459 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021363 other downstream 1620004 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021356 other downstream 1899594 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021390 other upstream 9073 41524790 ~ 41529013 (-) True XLOC_010940
TCONS_00021392 other upstream 19743 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021399 other upstream 188197 41703914 ~ 41705815 (-) False XLOC_010944
TCONS_00021411 other upstream 366728 41882445 ~ 41882560 (-) True XLOC_010951
TCONS_00021414 other upstream 421121 41936838 ~ 41961194 (-) True XLOC_010952

Expression Profile

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