RNA id: TCONS_00022225


Basic Information

Item Value
RNA id TCONS_00022225
length 1729
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_010940
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41523038 ~ 41529013 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaagTACACTGGTCGCTGAAGGAGGAACTGCCGAGGCTGAAAACAATCATGTTGGCTGTTCTGTTGACCGCTTTAATGTTTAGTCAAGGGCTTTCAATGGACAGCCGTGGGACGAGTTTCATCACAGCATTCCCCGAGAACGTTGCCTTTTATTTTCAAAAGACCTATAACCTATTGAAAATCACCACCCTTCACCCAAACACGGCTGTCAGTGTCATTGAAATGGCGAGTGGCAACATCACCAATTCAGCCGCTGGCAACAACGGAACCATTTTGACTTTGAATTTCTCAAAGGATGCTGAAGAATACCAGTTTGCATTCTCCAATAAGTCTATTCGAATCACCAGCGATAAAAACATCACAGTGCTTTCTATGAGTGGATGGGAGGGTCGATTTCAGTCCCGTGTTGTTCAGCCTGATCAAAACCTCAGAACGGTGTATCAGATCCCTGCTCTAAACTACACCAAGATTGCTGCATCCTTTAACCTTTCAGTGGCATCAAATGTCACGTTTCTCAATTTTAGGCTGATGATTATCAATGCAGTGGACGGAGACAACAGCGTCACCATTAAATATGGAGACGGAAGTGGACAAAGCCAAGATACCATAGCACTTGGCCCTTTTGAACTCTTCCAGATGCAGATTAATGGGTCGGAGGGAGAAATAACTGCGACGGATGAAGTGGCTGTGATTCTGACCCATCCCTGCTTGGATACTGTTAACTGCTCATGCAACATGGTGGTGAACCAGCTCAAACCCCAAGTATCTGATAGAAAGGTTGCCAGATTCCCTGTGCCATCTATTTTTGGTGTCAAGCAGCTGTTTGTGACAACAAATCAAGCCTTCAAAGTCTGTCAGGGTGTATTTAATGATGCAAATAGTATTCAAGTCCAAAAGTCTGTAGACATCTTGCCCCTCTTTCCAAATTTCCTGAGCTCGGCCTTGCTTATTTCTACCAACATTGGTGTTTCCCTCCGACTGATCAGTCCAGGACTCATTCTTGACCTCATGCCGACAAGCATGTTTTCTGGCTGCTTTCTGGTAGACTTCAACTCTTCACGCTCTGGAGCTTTGGTGATTGCTAATACATCCAGCACTACTGGGGTGAAAATGAACgatcagcctttaaatgtcatatgGTACCCTTTGAATGGCACCGAGTACTCTTGGGCTTTGGTGGAGGCACAAGTCATTGGAACCATCTGGCATCCGAATACAAAGATTGGTGTATATATGACACAACGCTTGGATTCCAACATCATCTATGGCAGCCAAGCAGTAGCTTTAAATATGGACTTAGATCAGAATGGCTGTCTGCTGACTCCGGAGATATTTGTGCTTGGTCAGGACAGCATGAACTGGTCCATGTCCCTTCAGTACTGCTCAGATAAGTATGACCAGCTCGCCACACTCAATGCTAAATCTGCACAGGATAAGATGGTCTTGAACATGTCACTGATACAACCCACGTTGGGCTGGATTGGTCTACGCCGCAGCCTGTTCACGACTGAGTGGTACTGGAGCAACAATGTGAATGTGAACTTCACTTTCTGGGAGCTCGGACAGCCTGATAAACCAGAGAAAGGCTTGTGCGCTTCGGTTGCGCTGGACCCTAGCAAGAAGTTCACATGGCAGAGTGCACGCTGCTGCTCTGAAAATAAACCCGTGTGCTATAGTGgccaaaaatatttcatttacagtCGTACtacaaaacaaatgttgtcttaa

Function

GO:

id name namespace
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022224 lncRNA downstream 414326 41103491 ~ 41108712 (-) True XLOC_010934
TCONS_00021379 lncRNA downstream 463398 41057916 ~ 41059640 (-) True XLOC_010932
TCONS_00022223 lncRNA downstream 463709 41057916 ~ 41059329 (-) False XLOC_010932
TCONS_00021831 lncRNA downstream 473144 41042994 ~ 41049894 (-) True XLOC_010933
TCONS_00022222 lncRNA downstream 487003 41034317 ~ 41036035 (-) False XLOC_010932
TCONS_00021393 lncRNA upstream 13066 41542079 ~ 41542863 (-) True XLOC_010942
TCONS_00022226 lncRNA upstream 155855 41684868 ~ 41688975 (-) False XLOC_010944
TCONS_00021398 lncRNA upstream 160084 41689097 ~ 41699268 (-) False XLOC_010944
TCONS_00021400 lncRNA upstream 183621 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021402 lncRNA upstream 193967 41722980 ~ 41737998 (-) False XLOC_010944
TCONS_00021388 mRNA downstream 7321 41505255 ~ 41515717 (-) False XLOC_010939
TCONS_00021389 mRNA downstream 7376 41507264 ~ 41515662 (-) True XLOC_010939
TCONS_00021387 mRNA downstream 19113 41495670 ~ 41503925 (-) True XLOC_010938
TCONS_00021386 mRNA downstream 35015 41468529 ~ 41488023 (-) True XLOC_010937
TCONS_00021385 mRNA downstream 35449 41467188 ~ 41487589 (-) False XLOC_010937
TCONS_00021391 mRNA upstream 3603 41532616 ~ 41535690 (-) False XLOC_010941
TCONS_00021394 mRNA upstream 56632 41585645 ~ 41667101 (-) False XLOC_010943
TCONS_00021395 mRNA upstream 57171 41586184 ~ 41646164 (-) True XLOC_010943
TCONS_00021396 mRNA upstream 155988 41685001 ~ 41714988 (-) False XLOC_010944
TCONS_00021397 mRNA upstream 157438 41686451 ~ 41717063 (-) False XLOC_010944
TCONS_00021378 other downstream 488003 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021375 other downstream 840335 40681928 ~ 40682703 (-) True XLOC_010929
TCONS_00021364 other downstream 1485242 40036711 ~ 40037796 (-) True XLOC_010920
TCONS_00021363 other downstream 1637787 39885134 ~ 39885251 (-) True XLOC_010919
TCONS_00021356 other downstream 1917377 39557786 ~ 39605661 (-) True XLOC_010916
TCONS_00021392 other upstream 6447 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021399 other upstream 174901 41703914 ~ 41705815 (-) False XLOC_010944
TCONS_00021411 other upstream 353432 41882445 ~ 41882560 (-) True XLOC_010951
TCONS_00021414 other upstream 407825 41936838 ~ 41961194 (-) True XLOC_010952
TCONS_00021415 other upstream 419062 41948075 ~ 41949116 (-) True XLOC_010953

Expression Profile

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