RNA id: TCONS_00021414


Basic Information

Item Value
RNA id TCONS_00021414
length 600
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_010952
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41902949 ~ 41961194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATTTAACGAGCATATTTTCATAAAACTAACTATGAAATCCTCATTTAGTCCAGCGATTGTGAGTTTAGAACGGCGAAGAGGCGAAATCACGGATGAGAAAAAGTAAACAGAGGACCGTTTTCTCTCCCACCGGTATCTTTAGCATTCTGCTAGCAGCCAACTAGCGTCTAGGATCCGATCCAACTGTCTGAATAGTACAGCTGACCGGTTCGTTAGCACCGCTAACCCCTATCATGGTTTGTTTACTTAAGTTTGATTTGTCATTTACGCATTTTCCTGCGTATATAATGTCGACTCGACGTTAAAATTAAATTCGTCTTTAGAAAAAAGTGACTAAATTTGAAAACTGGCGACGAAAGATACTTTTTTTGTTAGCTTGCCGGCTAAAGTAGGGGTGCTGATGTGTTCCTACGAGAAAGTGGATTTTAACATCACCCCTCGTACTGTCGCCCGCCTGGTTTATGAGGCCgaacaagaaaaaaacaatgggGGAAATTCGTCTAATGGAAGTACAGCCAGTAACTCTCCACGCAGCACACCCGGCAGCTCGCCCTCCTTACGCCGGCGTGTGTTGGGAGGCAGAGCCAGTGAAGGAGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-688 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1A (GRAM domain containing 1A).

Ensembl:

ensembl_id ENSDART00000136755

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021402 lncRNA downstream 198840 41722980 ~ 41737998 (-) False XLOC_010944
TCONS_00021832 lncRNA downstream 198911 41726666 ~ 41737927 (-) True XLOC_010944
TCONS_00021400 lncRNA downstream 199014 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021401 lncRNA downstream 199108 41723048 ~ 41737730 (-) False XLOC_010944
TCONS_00021398 lncRNA downstream 237570 41689097 ~ 41699268 (-) False XLOC_010944
TCONS_00021833 lncRNA upstream 1011891 42973085 ~ 42974540 (-) True XLOC_010975
TCONS_00021450 lncRNA upstream 1013353 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00022227 lncRNA upstream 1013353 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021453 lncRNA upstream 1041959 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00021459 lncRNA upstream 1061386 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00021410 mRNA downstream 69005 41867176 ~ 41867833 (-) True XLOC_010950
TCONS_00021409 mRNA downstream 81830 41853715 ~ 41855008 (-) True XLOC_010949
TCONS_00021408 mRNA downstream 96170 41840011 ~ 41840668 (-) True XLOC_010948
TCONS_00021407 mRNA downstream 129441 41806740 ~ 41807397 (-) True XLOC_010947
TCONS_00021406 mRNA downstream 132232 41802353 ~ 41804606 (-) True XLOC_010946
TCONS_00021417 mRNA upstream 22838 41984032 ~ 41990421 (-) True XLOC_010955
TCONS_00021418 mRNA upstream 32357 41993551 ~ 42004544 (-) True XLOC_010956
TCONS_00021419 mRNA upstream 45896 42007090 ~ 42014272 (-) False XLOC_010957
TCONS_00021420 mRNA upstream 47619 42008813 ~ 42013858 (-) True XLOC_010957
TCONS_00021421 mRNA upstream 87168 42048362 ~ 42056137 (-) True XLOC_010958
TCONS_00021411 other downstream 54278 41882445 ~ 41882560 (-) True XLOC_010951
TCONS_00021399 other downstream 231023 41703914 ~ 41705815 (-) False XLOC_010944
TCONS_00021392 other downstream 401125 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021390 other downstream 407825 41524790 ~ 41529013 (-) True XLOC_010940
TCONS_00021378 other downstream 901803 41034317 ~ 41035035 (-) False XLOC_010932
TCONS_00021426 other upstream 112142 42073336 ~ 42081073 (-) True XLOC_010960
TCONS_00021429 other upstream 216498 42177692 ~ 42186065 (-) True XLOC_010962
TCONS_00021435 other upstream 360733 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021443 other upstream 907860 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021444 other upstream 912546 42873740 ~ 42874709 (-) True XLOC_010970

Expression Profile

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