RNA id: TCONS_00021416


Basic Information

Item Value
RNA id TCONS_00021416
length 649
RNA type processed_transcript
GC content 0.42
exon number 3
gene id XLOC_010954
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41955855 ~ 41965309 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGAGTGGGCTGCACATTAGATTTCCTGCTGGACCCACGAGCTGGTGCACTTTTATATTTAGCAGAGCTCGAGTTTCCAGAAGCCCATTCACTGTCAGCAGACTAACAGAGGCACAACGAATATCTCTCTCTCCAGGCTACAAGACGACTCACGCGTGTGTGTTTATGtccttgtgtgtgtgagacagagagatGGCAAGTGTCGAAACGCCTAAATGCGAATTAAGAGCCGAATGGTGACCTTCTTGGGGAGAAAAGGGCTGGTGAGAAAATAATTTCCAAATGCATCTTGCAATGATTGACAGAATAATGAAAATGATATTTGCTGATACAAGCAATCGAGCAATGTGATCTTATCATACCTGATGTGCGTACCTCGATGACACGACAGATTGCAAAATTGCATTTTTGTCAAAGGAAAAAGGGGCAGAGACATTATAAAGGAAGTCTTTAATAGCGAAAGAGGAAGAAGATTGATTTGACTTCCAGCAGTCTTGAGATCTAGCAAGTTTGAACTTCAGAAATGCTCTGTTCTTCCTTGAAAAATGACCTATTACTGGAAGATATGCCTCCACCCTTTTGTGTATATTAGAAATCTGTGATGGCTCCGCCCCATTTTTGCAAGTTCATACTGCAGgaaattatatc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136742

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021402 lncRNA downstream 217857 41722980 ~ 41737998 (-) False XLOC_010944
TCONS_00021832 lncRNA downstream 217928 41726666 ~ 41737927 (-) True XLOC_010944
TCONS_00021400 lncRNA downstream 218031 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021401 lncRNA downstream 218125 41723048 ~ 41737730 (-) False XLOC_010944
TCONS_00021398 lncRNA downstream 256587 41689097 ~ 41699268 (-) False XLOC_010944
TCONS_00021833 lncRNA upstream 1007776 42973085 ~ 42974540 (-) True XLOC_010975
TCONS_00021450 lncRNA upstream 1009238 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00022227 lncRNA upstream 1009238 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021453 lncRNA upstream 1037844 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00021459 lncRNA upstream 1057271 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00021412 mRNA downstream 11090 41902949 ~ 41944765 (-) False XLOC_010952
TCONS_00021413 mRNA downstream 18923 41929606 ~ 41936932 (-) False XLOC_010952
TCONS_00021410 mRNA downstream 88022 41867176 ~ 41867833 (-) True XLOC_010950
TCONS_00021409 mRNA downstream 100847 41853715 ~ 41855008 (-) True XLOC_010949
TCONS_00021408 mRNA downstream 115187 41840011 ~ 41840668 (-) True XLOC_010948
TCONS_00021417 mRNA upstream 18723 41984032 ~ 41990421 (-) True XLOC_010955
TCONS_00021418 mRNA upstream 28242 41993551 ~ 42004544 (-) True XLOC_010956
TCONS_00021419 mRNA upstream 41781 42007090 ~ 42014272 (-) False XLOC_010957
TCONS_00021420 mRNA upstream 43504 42008813 ~ 42013858 (-) True XLOC_010957
TCONS_00021421 mRNA upstream 83053 42048362 ~ 42056137 (-) True XLOC_010958
TCONS_00021415 other downstream 6739 41948075 ~ 41949116 (-) True XLOC_010953
TCONS_00021411 other downstream 73295 41882445 ~ 41882560 (-) True XLOC_010951
TCONS_00021399 other downstream 250040 41703914 ~ 41705815 (-) False XLOC_010944
TCONS_00021392 other downstream 420142 41535460 ~ 41535713 (-) True XLOC_010941
TCONS_00021390 other downstream 426842 41524790 ~ 41529013 (-) True XLOC_010940
TCONS_00021426 other upstream 108027 42073336 ~ 42081073 (-) True XLOC_010960
TCONS_00021429 other upstream 212383 42177692 ~ 42186065 (-) True XLOC_010962
TCONS_00021435 other upstream 356618 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021443 other upstream 903745 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021444 other upstream 908431 42873740 ~ 42874709 (-) True XLOC_010970

Expression Profile

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