RNA id: TCONS_00022227


Basic Information

Item Value
RNA id TCONS_00022227
length 1698
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_010976
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42974547 ~ 42993892 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCGTGGCTGCTGGACGGTGGAGGAGACGCAAATGGAGGCCTCAGAGTCGAGTTTCCCAGGCTTCAGGTTTCTCAGTCACAGCCGCACAAAGAGGAGCCTGTGCGGGCGACGGGGACGCTGGAGCGACAGctgcaacccattacccATGGGAGAAAcgggagtacccggaggaaacccacgtaaacacaggaagaacatgcaaactccacacagaaatgccaactgacccggccaaggctcaaaccagcgaccttcttgttgtgaggtgacatcgctatccactgcgccactgcgtcgcctcagATCACAAAGGGCTTCGGTGAAGAGCTTTATGCCAACCTGATGGGAGGAAGGATGAAGTTTTACCACACACAGCCTGAAACTGGACTGAATTTACACTCTTGAATGCcttgtaaagggatagttcacgcaaaaatgaaaatgtgcagtTATTTAAATCACCCTCAGATCATCTTTTTTCTTCAGTACAGCATTAAAGAAGAAATAATTCTTGGTGGTTTAAAAAACACATGTCAACAGTATACCAGCACTTTAGGGGTTAAAAatatacaggaaaaacaaaaataacaccCATCGCTCCTGACTGAGGCCCTCTAAAGCAAAATGATTAATCTGTGCAATATGCAGacaattatttacaacattattttaaGCCTGACAAAACAGTTGTGATTGTTTGTAGCAAGAGCttctttaaaggaatagttcacacaaaattacAACTACCCCATCAATACATTCTTGAGGTACATGACTTTCTAATGTCAGATGAACACATTTTATCACTGCTCTTTCAGGTTGTGTAATGGTGTTAGAAGTGCATAAATCTATTATAAAAACCAACCCAATCGCTGGAATTTAGTGACTTgactttataatttaaaaatgagaTATATTgaactagaaaaaaaaatctatatagtctaattctagaaaaaaaaattaaggggcacctatgatgaaaatcaacttttgtaaactgtttgaaCTGTGgaactgtgtatgtgtgtctacagtcatattagagtgacagtaacacaacaaatatcttttttaaaatttcctgacaatgaaaataggacccaaatctcaGTGAATTTCAGGCCCACCACAGCGTGACGTAAGACTGCGGTTTTTcccacccactgaattgattgacaggcaccattGTGGACATATACActtgtccacagaacatttttggCAAATAAACtagcattaaaatatttgttccaactccctgtgatttttcaaaagagcatgtttgtaatgaagacAGTAACATCGCCATGTAATTCTTTACTGCTATAATCACCATGGCCGCATAGTAAAtgctgatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgctgtcaaaaaaatttgtgtgagactcatcgtttcagaaaggcttgaataaactccaccataaATACAGGAAATAAACTtatttggtatttttgactaatgagctgcaTTTCAGCTTTATTGTGCTaaattgtgtgaatgagtgtgtgtgtctgttattttctctttgtttagCTGTCAAAAAATCTGatgaataaatcttaaaaaagacTAATTGAAATATTTTTGTCTCAAAAACACATCATTTTGCTTCATGAGACGTCTTGGATTTTGTTCACCTGGATAAAGGACGTCATAGACCAAAGAT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0021510 spinal cord development biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021833 lncRNA downstream 7 42973085 ~ 42974540 (-) True XLOC_010975
TCONS_00021402 lncRNA downstream 1236549 41722980 ~ 41737998 (-) False XLOC_010944
TCONS_00021832 lncRNA downstream 1236620 41726666 ~ 41737927 (-) True XLOC_010944
TCONS_00021400 lncRNA downstream 1236723 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021453 lncRNA upstream 9261 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00021459 lncRNA upstream 28688 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00022228 lncRNA upstream 125221 43119113 ~ 43124227 (-) True XLOC_010981
TCONS_00022229 lncRNA upstream 365033 43358925 ~ 43368871 (-) True XLOC_010987
TCONS_00021474 lncRNA upstream 594751 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00021449 mRNA downstream 4949 42968097 ~ 42969598 (-) True XLOC_010974
TCONS_00021448 mRNA downstream 9355 42938859 ~ 42965192 (-) True XLOC_010973
TCONS_00021447 mRNA downstream 41215 42900238 ~ 42933332 (-) True XLOC_010972
TCONS_00021445 mRNA downstream 79919 42883799 ~ 42894628 (-) False XLOC_010971
TCONS_00021441 mRNA downstream 101976 42869054 ~ 42872571 (-) False XLOC_010969
TCONS_00021451 mRNA upstream 6936 43000828 ~ 43011501 (-) False XLOC_010977
TCONS_00021452 mRNA upstream 9155 43003047 ~ 43011498 (-) False XLOC_010977
TCONS_00021454 mRNA upstream 9425 43003317 ~ 43011470 (-) True XLOC_010977
TCONS_00021455 mRNA upstream 20525 43014417 ~ 43026273 (-) False XLOC_010978
TCONS_00021456 mRNA upstream 21211 43015103 ~ 43025885 (-) False XLOC_010978
TCONS_00021446 other downstream 80037 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 99838 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021443 other downstream 101975 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021435 other downstream 600367 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021429 other downstream 788482 42177692 ~ 42186065 (-) True XLOC_010962
TCONS_00021462 other upstream 34191 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021472 other upstream 423740 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other upstream 561572 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021499 other upstream 1879652 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 2024532 45018424 ~ 45018540 (-) True XLOC_011005

Expression Profile

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