RNA id: TCONS_00021467


Basic Information

Item Value
RNA id TCONS_00021467
length 3544
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_010983
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43227724 ~ 43233509 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGACGTACTGCCGCGCCTGCGGTCAGTGTGTTGTGCGCGCTCCCGAAGAAGAAGAGTGTTCATACAACACGGTGGAACCCAACGACAGAAAACCACCGATTTAAGTGAGAAAATGACTGCTACATCACCTAAACATTCATTAAACGCTCGACATTAATCAGGTATCATTTGCTGACTTCAGCCATGTCTTGTCGTGACATTCACGCCACCAATGCGTTCGCCTTTGTTATTGCGATGCTGTCGGTCGGTGGTTTGACCGTTGCTACACTCATTCCTCAGTGGAGAACCATGCGCCTGCTTACCTTCAACCGTAATGCCAAAAATGTGACTGTATACGATGGCCTGTGGACCAAGTGTGTACGGCGGGATGGCTCTTCAGGCTGCTATTACTTTGACTCAGACTGGTACGCAAAAGTAGACCAGTTGGACCTCAGATTGCTGCAATTCTGTTTACCTACTGGTCTGCTGTTTTCCAGCTTGGCTCTTCTGCTCTGTCTTACTGGCATGTGTAAAACTGCTTGCTGCTCCAAAACCCCTGACGACATCAAGAACTCTCGCTGCTTGGTCAACAGCTCAGGCTGCCATCTAGTAGCTGGGATGCTTCTGTTTCTAGGTGGAGCGATCGCCATGCCACCCTCCGTCTGGTTCCTCTTCCACACCCGTCACCTAAATGAGCGCTACGATCATTTATTTGCTGTTGAGTTTGGGGTGTATGTGGCCATCGGCAGTGCTGGTGGTTTAATCCTGGCTGCTCTGCTGATGTTCATGTGGTATTGTATGTGTAAAAAACTGCCTTCGCCTTTCTGGCTGCCTCTTCCTGAAGTGCCCACAATGACCCAAAGCCTCTCTGCGCAGCCTCTCATGACCAACGGTTTGCCTACTCCCGTGACGTACGCGCCCCAGAGCTTCCCTCCAGCCGTTCTGGACGCCCCTGCTTTTGTCCCAATGCAGGGTTACCCTCAACCTGCATCCACACAGCCTATGCCCCCCCACGTCTACATGCCACAAATGTCTGTGCCAGATGGTTATGGCTCAGAAGTTGGAGCCTCGCAGGTTTATAGTTATGCCCCCTCACAAAGCTACGCTCCTTCTCAGGGATATGCTCCATCACAAAGCTACGCGCCATCACAGAGGTACGCCGGACACCGATATTCGACACGCTCCCGAACGTCAGGGATTGAGATTGACATTCCTGTCCTCACAGATTGAGATTGGCTGTCTAAGGATATTTCaaattaaaaaggtcatatttagAAATTAGACAACAACTCTGATGGTAAATTTAAAGTCATGTAAATGGTTAAATAGAAAGAACAGCCTTCATTTGGTTAATGTCGCCTCTAATTCTTAGGACTAAAATGGCCAGAACTATCAGAAAAGTGATTTGAGCAGATAGAAAGGTGACATTCTCATATAACCTCGTATTACAACTAAAGTCTGCAGTAAAGCAACTCtgaacacatcaaaccttgaagcagatgagctactgCAGAAGAAGAGCAAACTGGTGACACTCCTGTCTGCTAAGAAAACTGAGGTTCCCATTGACATGAGCTCAACAAAACTATGACAGAAAATTGTAGGAAGGTTGGCTATTCTGATACATCTTAGGCCCATTTCAGTTCTACCTCTTAAACCCTTCCACTTACTCTTACGCCTCCAAGCAAAAGAGAATCAGTAAGCGAAAGTGCCGTTTTTATTGAATCAAAAAGGTCATAATTAGAAATTAGAGAACAACTCCGATGGTAAATTTGAAGACATGTAAATGGTTAAATTGAAAGATTAGCCTTTATTCAGTTGATGTCGCCGGTGCCTCTTAATTATTAGTactgaaaatggccaaaaaaggaaaaatcgatcaaaaaaattatttgagcAGATAAAAAGGTGACATTTTCTCAAATAACCTCTTATTACGATTAAAGTCTGCAGGAGAGCAACTCTGAACACAGCAAACCTTGAAgtagatgagctacagcagcagcagaagaagagcaCTCTGGTGACACTCCTGTCTGCTAGGAAAACTGATGCTCCAATTGACATGAATTCAACAAAACTCGATATCAGATCAGGCAACCATTTTACAATCTTCTGTTAACACTTAGGCCCAATCCAGCCTTCCACTCACTGATTATTTTTTGCTTGGAGGCGCAGTAAGGCGAAATGCCCTCCAAATACAAAGGTCATAATTAGAAATTAGAGAACAACTATGATGGTAAATTTGAAGTCATGTAAAttgtaaaattgaaaaataaGCCTTTATTCAGTTGATGTCACCAATGCCTCTTAATTCTTGGCactgaaaatggccaaaaaaagggaaaaaaacaacccGAAAAGCGATTTGAGCAGATAGAAAGGTGATGTTGTCTCAAATAACCTCTTACTACAACTAAAGTCTTCAGGGGAGCAACTCtgaacacatcaaaccttgaagcagatgagctacagcagcagaagaagagcGCACTAGTGACATTCTGGTCTGCTAAGAAATCTGATCATAATTAGAAATTAGAGTACAACTCTCATGGTGAATTTGAAGTTATGTAAATGGTTAAAGATACGCCTTTATTCAGTGGATGTCGCAGATGCCTCTTAATTCTTAGCACTAAAATGGCCAAAAAGGGAAAAAAGGTCATGAAAGCAGTAACACTAGCTGAAGTTGTGCATCTCGCTTTATAAtagtttcatttataaaacacaagcaaaacaaaCTTGTTAATAATTTCACTGAGTATGTCAAGGTGACTTCACTTAATTCATACTCATGTTTCGTGTTGTTACTCTGCTTTTAAATGTCAGTAGAAACACTGAATATAAAGTTGATTTTAAGCACTGTTTTAACCTTTAAGCAAATATTTCTGCTAATATCTAAATGTGACTATTACAGTAAATATTAGAAAGAGATGTAACACTGACTGCTGAAACTGTATTATTCTCAGTGCCATGAAGTTGGACGTTTTCTTTTTTAAGCTTAGTGAATATGTTGGTTTATTGCTCTAATATCTGTACATCATGTTTTCATGGGGTTTTATGCAGATGTCACAATGTTAAACGAACACCTAGTAgaggttttttatatatacatggaAGAATCATCTCTGCCTGATGCCTTTGTGCAGCTTAACTCTTGTTTCCAGAACTGTACTTCCACTTATTAATTTAATCCTTTATAATGAGCCTTACATCAACAAGCCATTAACTGAACACTGCGTTGCATTCCATTGTTttcttataaatgtaaatgttatcttattgttgttgttgtgttttaaagGTGTCACCAGCGTATTCATCATTGTGCAACTCAGCATTTGAATAATGAATGCTccattaatgtgtttgtttactgTTAGTTTCTTAGCTGAATTGAGGAAAACACGCTAATGTCTTAAACTTGATCTTCGCCTATTGAATGTTGCACATATCTATTTCAGTTTGCCTGTTTCTGCAAAGCTCTGCAGCACAATGTTAATTTTAATCACTGTGTAGTTTACTaatgtctttgtttttttattaaagtgcagtttatTGAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; gut; heart; and pleuroperitoneal region. Orthologous to human CLDN12 (claudin 12).

Ensembl:

ensembl_id ENSDART00000025877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022228 lncRNA downstream 103497 43119113 ~ 43124227 (-) True XLOC_010981
TCONS_00021459 lncRNA downstream 201837 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00021453 lncRNA downstream 216297 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00022227 lncRNA downstream 233832 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021450 lncRNA downstream 233860 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00022229 lncRNA upstream 125416 43358925 ~ 43368871 (-) True XLOC_010987
TCONS_00021474 lncRNA upstream 355134 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00021834 lncRNA upstream 920975 44154484 ~ 44159865 (-) True XLOC_010992
TCONS_00022230 lncRNA upstream 947266 44180775 ~ 44289374 (-) False XLOC_010993
TCONS_00022231 lncRNA upstream 947266 44180775 ~ 44289423 (-) False XLOC_010993
TCONS_00021466 mRNA downstream 88467 43135965 ~ 43139257 (-) True XLOC_010982
TCONS_00021465 mRNA downstream 88473 43126252 ~ 43139251 (-) False XLOC_010982
TCONS_00021464 mRNA downstream 162560 43047972 ~ 43065164 (-) True XLOC_010980
TCONS_00021461 mRNA downstream 186274 43028080 ~ 43041450 (-) False XLOC_010979
TCONS_00021463 mRNA downstream 186369 43028547 ~ 43041355 (-) True XLOC_010979
TCONS_00021468 mRNA upstream 58200 43291709 ~ 43317927 (-) True XLOC_010984
TCONS_00021469 mRNA upstream 85833 43319342 ~ 43335914 (-) False XLOC_010985
TCONS_00021470 mRNA upstream 102187 43335696 ~ 43344859 (-) True XLOC_010985
TCONS_00021471 mRNA upstream 119597 43353106 ~ 43356018 (-) True XLOC_010986
TCONS_00021475 mRNA upstream 445758 43679267 ~ 43679611 (-) True XLOC_010990
TCONS_00021462 other downstream 192433 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 333214 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 353015 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021443 other downstream 355152 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021435 other downstream 853544 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021472 other upstream 184123 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other upstream 321955 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021499 other upstream 1640035 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 1784915 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 1871104 45104613 ~ 45106574 (-) True XLOC_011010

Expression Profile

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