RNA id: TCONS_00021483


Basic Information

Item Value
RNA id TCONS_00021483
length 230
lncRNA type lincRNA
GC content 0.53
exon number 3
gene id XLOC_010993
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44180775 ~ 44295549 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGGGGCTGCATCAACAGAGCACAGGGATGATCCTCCGCTGTCTGTTTACATCGCTGCAGTGCATTCTGGGAGGTCACCCCGCAACCTGGGGCAGGCATGCTGTTTCACTGGatagaggaggaaaaaaaagcaTGCAGAGGAGCAGCGGGTCAGAAAGACCAGACTCATTTCACACAGAGAGAAGAAGTCAGACAGTGCCATCTTAAGGAGTAAAGGTGAAGTGAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194402

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021834 lncRNA downstream 31998 44154484 ~ 44159865 (-) True XLOC_010992
TCONS_00021474 lncRNA downstream 449520 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00022229 lncRNA downstream 822992 43358925 ~ 43368871 (-) True XLOC_010987
TCONS_00022228 lncRNA downstream 1067636 43119113 ~ 43124227 (-) True XLOC_010981
TCONS_00021459 lncRNA downstream 1165976 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00022236 lncRNA upstream 730 44222299 ~ 44295549 (-) False XLOC_010993
TCONS_00021484 lncRNA upstream 2507 44224076 ~ 44295490 (-) False XLOC_010993
TCONS_00021485 lncRNA upstream 35900 44257469 ~ 44295490 (-) True XLOC_010993
TCONS_00021491 lncRNA upstream 444035 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00021492 lncRNA upstream 447824 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00021478 mRNA downstream 64476 43819512 ~ 44127387 (-) False XLOC_010991
TCONS_00021477 mRNA downstream 64537 43818897 ~ 44127326 (-) False XLOC_010991
TCONS_00021480 mRNA downstream 64555 44021636 ~ 44127308 (-) True XLOC_010991
TCONS_00021479 mRNA downstream 64556 43953216 ~ 44127307 (-) False XLOC_010991
TCONS_00021476 mRNA downstream 220605 43818896 ~ 43971258 (-) False XLOC_010991
TCONS_00021486 mRNA upstream 117236 44338805 ~ 44349845 (-) False XLOC_010994
TCONS_00021487 mRNA upstream 117236 44338805 ~ 44399335 (-) True XLOC_010994
TCONS_00021488 mRNA upstream 213884 44435453 ~ 44649053 (-) False XLOC_010995
TCONS_00021489 mRNA upstream 252171 44473740 ~ 44512882 (-) True XLOC_010995
TCONS_00021490 mRNA upstream 431697 44653266 ~ 44673851 (-) False XLOC_010996
TCONS_00021472 other downstream 560622 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 636284 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 1156572 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 1297353 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 1317154 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021499 other upstream 651975 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 796855 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 883044 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 909352 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 919289 45140858 ~ 45144372 (-) True XLOC_011012