RNA id: TCONS_00022236


Basic Information

Item Value
RNA id TCONS_00022236
length 793
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_010993
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44180775 ~ 44295549 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGatctgagcgtgcagttgggtctcctTACCTGCCACTTCACCCAAcacaacagcaggtggcactgtctgagaaaacgAAAGGTCTGGAGAACAAGTCTGAGctctgagcgtgcagttgggtctctGGGCCTGCAGCTTCACCTTACAACTGTAGCTGGCAGAAGAACCTATTTGTTTTTGCTGGGAAAGCAGAGAGCCGTCGCAAACATTTGAATATGCCTATTTTTAACTTGCATATACAATTTTCacatctaaaatgctttaaaaactaGATTAATATGTTCTAAACTGCGAAAGAGATTATAAACGTCGTTCAATTACATCCTCAAATGTTAGTCTTGGGTAATCTGTCGTCCAGCAGATGGCGGCGTTAACCTATTTGTGTTCATTGTGCTGTTCTGTGTTGTGTTGGGCTGAGAAAAGTGGTTAGGCCTACCAGCCTACACGAAATATTTTCAACGGATTTACAGTATCTGTCCCTGACTGTCGTGATGTTTGCATGGAAGAGCCTAATGCAGATATGAACCACACTTTTCCTGTTTTTCTCAAGTCAAATCTAAAAAGCATTGCTGATATATTCGCACTGGTCTGTGACAAGACTTGTTTATGTGACCAGAACACGTGCTTCAGCAGGTAAAGACTGAATGGACGTAAATGTGTATAGGCCTACTTCATCAGctccaGTGAAAAGAAGGAAGACGTTCATATGGTTGAGATATGGTGGTGTTGTTCACGTCTGCGCATCTTATAAATTCAATCACTGACACGACTTGAAGGCAGTAAAAGCGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021481 lncRNA downstream 730 44187324 ~ 44221569 (-) False XLOC_010993
TCONS_00021482 lncRNA downstream 730 44190863 ~ 44221569 (-) False XLOC_010993
TCONS_00021483 lncRNA downstream 730 44191863 ~ 44221569 (-) False XLOC_010993
TCONS_00021834 lncRNA downstream 62434 44154484 ~ 44159865 (-) True XLOC_010992
TCONS_00021474 lncRNA downstream 479956 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00021491 lncRNA upstream 370055 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00021492 lncRNA upstream 373844 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00022237 lncRNA upstream 717365 45012914 ~ 45014480 (-) True XLOC_011004
TCONS_00022238 lncRNA upstream 792422 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00021519 lncRNA upstream 932554 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021478 mRNA downstream 94912 43819512 ~ 44127387 (-) False XLOC_010991
TCONS_00021477 mRNA downstream 94973 43818897 ~ 44127326 (-) False XLOC_010991
TCONS_00021480 mRNA downstream 94991 44021636 ~ 44127308 (-) True XLOC_010991
TCONS_00021479 mRNA downstream 94992 43953216 ~ 44127307 (-) False XLOC_010991
TCONS_00021476 mRNA downstream 251041 43818896 ~ 43971258 (-) False XLOC_010991
TCONS_00021486 mRNA upstream 43256 44338805 ~ 44349845 (-) False XLOC_010994
TCONS_00021487 mRNA upstream 43256 44338805 ~ 44399335 (-) True XLOC_010994
TCONS_00021488 mRNA upstream 139904 44435453 ~ 44649053 (-) False XLOC_010995
TCONS_00021489 mRNA upstream 178191 44473740 ~ 44512882 (-) True XLOC_010995
TCONS_00021490 mRNA upstream 357717 44653266 ~ 44673851 (-) False XLOC_010996
TCONS_00021472 other downstream 591058 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 666720 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 1187008 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 1327789 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 1347590 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021499 other upstream 577995 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 722875 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 809064 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 835372 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 845309 45140858 ~ 45144372 (-) True XLOC_011012

Expression Profile

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