RNA id: TCONS_00021489



Basic Information


Item Value
RNA id TCONS_00021489
length 1257
RNA type mRNA
GC content 0.56
exon number 8
gene id XLOC_010995
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44435453 ~ 44649053 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGCCACGATCGCCGTCTGACTATGGAGCCGGAGATCGGCAGTGGCGGGGAGGCTGCGGGCGCTCCTATGAGGACGCGGAGGTAGCGCGAGGGGCGTACCGGGCTCGACGGGGCGGCTGGCACTCTCAGGAGGAATACCCACCCGAACCTGGCTTCCTACCCGATGGACCACCCCTCAGCGAGCACGAGCTCCAGCGCCAGCGGCAGGAGGAGTACCAGAACCGCTACCGCAGTGACCCAAACCTGGCTCGATACCCTGTCAAACCACAGCCCTACGAGGAGCAGATGCGCATGCACGCGGAGGTCTCCAGATTTAGGCATGAACGGCGGCACAGTGATGTCTCCCTGGCGTACACTGAGATGGAAGAGCCCCTGGGGCCTCTGTCCAACCACAGTCCCCCTGGCACAGACTCGGCCCACCGGCAGCAGCAGCTCCTGGATCCCGTCTCGGCTGTACGGAAGAGTAAAAGGGAAAAGATGGAGAGCATGTTGAGGAACGACTCGCTCAGTTCCGACCAATCGGAGTCCGTCAGGCCGCCGCCACCCAAACCTCACAAGACAAAGCGAGGCGGGAAAATGAGGCAGGTTTCACTGAGCAGCTCTGAGGAGGAACTGGCCACAACGCCCGAGTACACCAGCTGCGAGGATGTGGAGATTGAGAGCGAGTCAGTCAGTGAGAAAGGAGATTTGGATGGCCACTGGTGGGATCACACAACGTGGCACAGCAGCGATGCCTCCATCATGTCTTTGCACCCAGTTACATGGCAGCCCTCCAAAGACGGAGATCGGCTCATCGGCAGGATCCTGCTCAACAAGCGCATGAAGGACGGCAGCGTTCCCCGCGATTCCGGAGCTCTTCTGGGACTCAAAGTGGTTGGTGGAAAGATGACAGAGTCTGGGCGACTTTGTGCGTTCATTACCAAAGTAAGGAAAGGGAGTTTAGCGGATACAGTTGGGCACCTCAGACCAgGTGACCAGGTCCTGGAGTGGAATGGCCGACAGTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTTTAGAATCAAAGCCAGAGCCTCAGGTGGAACTAGTGGTCTCACGACCCATAGGAGATATACCCAGGATACCAGAAAGCACACACGCACAACTTGAGTCCAGTGAGTACGATTCTTCAGTAGTGTGTATAAATGATGAGATTTTCCGAGACATTAATGAGACATTTCCACAGATCtctgattatttttttccttccttcaCTTTGAATCTGTTCTAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000191241

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022236 lncRNA downstream 178191 44222299 ~ 44295549 (-) False XLOC_010993
TCONS_00021484 lncRNA downstream 178250 44224076 ~ 44295490 (-) False XLOC_010993
TCONS_00021485 lncRNA downstream 178250 44257469 ~ 44295490 (-) True XLOC_010993
TCONS_00022235 lncRNA downstream 179126 44221219 ~ 44294614 (-) False XLOC_010993
TCONS_00022234 lncRNA downstream 184317 44190701 ~ 44289423 (-) False XLOC_010993
TCONS_00021491 lncRNA upstream 152722 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00021492 lncRNA upstream 156511 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00022237 lncRNA upstream 500032 45012914 ~ 45014480 (-) True XLOC_011004
TCONS_00022238 lncRNA upstream 575089 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00021519 lncRNA upstream 715221 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021487 mRNA downstream 74405 44338805 ~ 44399335 (-) True XLOC_010994
TCONS_00021486 mRNA downstream 123895 44338805 ~ 44349845 (-) False XLOC_010994
TCONS_00021478 mRNA downstream 346353 43819512 ~ 44127387 (-) False XLOC_010991
TCONS_00021490 mRNA upstream 140384 44653266 ~ 44673851 (-) False XLOC_010996
TCONS_00021493 mRNA upstream 166777 44679659 ~ 44709832 (-) True XLOC_010997
TCONS_00021494 mRNA upstream 241917 44754799 ~ 44763813 (-) True XLOC_010998
TCONS_00021495 mRNA upstream 275449 44788331 ~ 44878255 (-) False XLOC_010999
TCONS_00021496 mRNA upstream 284114 44796996 ~ 44878255 (-) False XLOC_010999
TCONS_00021472 other downstream 842499 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 918161 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 1438449 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 1579230 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 1599031 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021499 other upstream 360662 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 505542 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 591731 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 618039 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 627976 45140858 ~ 45144372 (-) True XLOC_011012

Expression Profile


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