RNA id: TCONS_00021497


Basic Information

Item Value
RNA id TCONS_00021497
length 3336
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_010999
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44788331 ~ 44878255 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCCTTCATACAGATCAAGAATATTTGAAAAAGTGTTGTATCAATAGTGATTATTTTGTTGTCCTTCATTGGCCGTTTCTCTGTTTCAGAGGTAGATCTGATGAGCTCCAAACCTGGTGCTACCAACACAACTGGACCTTCCTCTCCAACATCAGTGTCCAAGAAACACGGTAAGCTGATGGGCTTCCTGCGCACCTTCATGAAGTCCAGACCCACCAAACAGAAGCTGAAGCAGAGAGGAATCCTGAAGGAACGAGTGTTCGGCTGCGACCTCGGCGAGCATCTGCTCAACTCTGGCCTAGATGTGCCACAGGTCCTGACGAGCTGCTCAGAGTTCATAGAGAAGCACGGTGTGGTGGACGGCATTTACAGACACTCTGGTGTGTCCTCCAACATACAGAAACTCAGGTGAGTGTATGTTAATGTTCTGTTCAGGGGTTTGTACACTTTATTATGGAACTGTGTAAATAACAGTGAGCCTTAAAGTCAACTAAAAACAAAATTTAGACCGAAGATTATTTCATTTACTGATGTACAAGTTTTAATAGTATGTGTCTCCTACACTGCCCTGTAcaattaacccttgtgtattgttcagagTTCATGGCTGTTTTTCGCCCCATTTACTCCgctataaccattttttttattgtaaagctgtgacaccatataatcatgcattcttgattgttggtggtttttcctgttgggaagaggtacaacTTTTACTGTTCACCATCATAGCTCAccgtttactaatgcattattaacatccaaatttatacttgttaacattagttaaaactccggtttcccccacaagtccaaaaacattttGTATAGGtcaactgggtaagctaaattgtccgtagtgtatgtgtgtatgtgagtgtgtatggtagggatgggaagattaaccgatatgtatcgatacgcggtcatgcgcgtgcacgatgcgagtgcatcggtagagcagcagaggatgaatgaaattttggaagcaaattgagatgcatcggtttttgcgagatgcatcggtttttccaagatacagcttatatttttaagatataatgtattttttatttattagcaagtgttgtcaacctgtttttggcgcattatttaatcgacctacataaagtatgccttagcaacggacttgcggatgtgtacacttacactacaactcagagtatcaggtgtgcggatgaagctagtggagcgccctcagaaagcgtgagaagcaaaacaaatattttattccccactgagttttaaatctaaagtatggcaacattatggattttgcAAAAAAGATGGACGACTTtttaggacagatgcaatttgcaaaatgtgccgcgcatctgtaaaatacacgggcagtacgactaatctgaaatctcacttgaagcggcgacacggtgttgttgtggaagcatcttccagtgttccttcatccccggcttcctgctctgcttcaactgtagctaccagctccaaaagtggtgagaaaagcattgcaagttttctccatgcgcaacagttctgctcgctctacgccaataacgaatgctattgcattgttcatctgcaaagatattcagcctagtgtcacggagaacaaaggttttaaacacctcctcctgttaatttttatttatttatatttttattagcctgttgtttacagtgacagtgatgtttcaaagcagcataacactgctagttcacgaccttaggttttgaatattcagtggcacaatatatctttgtaaaacttgttttcatagttgaaaggttaaatcacaattcttgttgtgcaatgctaaacctttatgttgaaagagtgcaaatatatacatttataatatatattgcacttatacattctgtttatcttgaaaatacttaaataatatgtgctatgggttctaaaatggccctctactgtaaactgacactctggctctgagagaaaagccagtttgtaaaaaaagtcttggttttgctttgttaataaataatcaaactcattcaatggcacagcatcctttcttacatcatctcataaacttgatccaattagttagtgctgaattatcgcattgtatcgtgatatgggtgtgaatcgtatcgtgttgcatcgcaatatgtcacaaatgtatcgctaatatatcggatcgtattctttgtatcgagatgcgtatcggatcggcattatagcttagatgcccaaccctagtgtatggatgtttcctagtaatgggtagcagctggaagggcatctgctgtgtaaaacacatgctggataagttggcggttcattccactctggctaccccagattaataaagggactaagccgaaaagaaaatgaataaatgaatgaataacagtgTACCACAGGACTTtttattaactagcatgaacacatactgtcataaatgtattgttcatgttagttaatgcatgaactaataaaaccttgttgtaaagtgttacccaaacatTTAAGGTACTGTACAAGTCATGTTTAtaatgtagtgtagtgtagttgaTGCTGTTTATATCTGACATATGACAGTGACTTCTGTTCTCTTGAATTTCATCCCGATCAGGCATGAGTTTGACAGTGAAAACGTTCCAGACCTGACAAAAGATGTGTACATGCAGGATATTCACTGCGTCGGCTCGCTCTGCAAACTCTACTTCCGAGAGCTGCCCAATCCATTGCTCACATACCAGCTTTACGACAAGTTTGCTGTAAGTCATTCTGTCTCTAGCAGATATAAGACCAAGGGATGATGTACATTTCACTTATGAAAACGCATTACAAGAGAAAAGTTTTTCTAAATTGCAATAATAATTCACTCTATTGCTTTTGCTGTATTAATTACTGATTAATATATGCAGCCTAGGCTATGTTTTAAAATGACTAAGCAAACTGTGTCCTTGTCTGTCCAGGAATGTATGGGAGAAATGACGGAGGAAGAGAGAATGGTGAAAGTGCATGATGTTATCCAGCAGCTTCCTCCTCCGCATTACCGGTAAACCCAACACTGGCACTGAGGTGAAACTGCAGAGTGACAGGAAGAGCAGTGTTTTCTGACCAtaagctgtgtgtttgtgtctctttCAGCACTTTGGAGTACCTCATCAGACACCTGGCCCATTTGGCCACCTGCAGTGCAGAGACGAACATGCACATAAAGAATCTGGCCATTGTCTGGGCCCCCAATCTGCTCAGGTAACTCCTATGTCTATCTGTAAATATGAACTGacagatgttttgttttgtattttggcttgttttgtttagttttgtgttttta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-121105-12 Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within protein transport and signal transduction. Orthologous to human ARHGAP33 (Rho GTPase activating protein 33).

Ensembl:

ensembl_id ENSDART00000185810

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021492 lncRNA downstream 127369 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00021491 lncRNA downstream 132369 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00022236 lncRNA downstream 505580 44222299 ~ 44295549 (-) False XLOC_010993
TCONS_00022237 lncRNA upstream 199662 45012914 ~ 45014480 (-) True XLOC_011004
TCONS_00022238 lncRNA upstream 274719 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00021519 lncRNA upstream 414851 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021835 lncRNA upstream 415192 45228444 ~ 45230712 (-) False XLOC_011018
TCONS_00021524 lncRNA upstream 502938 45316190 ~ 45322513 (-) True XLOC_011021
TCONS_00021494 mRNA downstream 37316 44754799 ~ 44763813 (-) True XLOC_010998
TCONS_00021493 mRNA downstream 91297 44679659 ~ 44709832 (-) True XLOC_010997
TCONS_00021490 mRNA downstream 127278 44653266 ~ 44673851 (-) False XLOC_010996
TCONS_00021488 mRNA downstream 152076 44435453 ~ 44649053 (-) False XLOC_010995
TCONS_00021498 mRNA upstream 1477 44814729 ~ 44878245 (-) True XLOC_010999
TCONS_00021500 mRNA upstream 68577 44881829 ~ 44900306 (-) True XLOC_011001
TCONS_00021501 mRNA upstream 106760 44920012 ~ 44945224 (-) True XLOC_011002
TCONS_00021502 mRNA upstream 170361 44983613 ~ 45001842 (-) True XLOC_011003
TCONS_00021504 mRNA upstream 206197 45019449 ~ 45042236 (-) True XLOC_011006
TCONS_00021472 other downstream 1169888 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 1245550 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 1765838 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 1906619 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 1926420 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021499 other upstream 60292 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 205172 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 291361 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 317669 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 327606 45140858 ~ 45144372 (-) True XLOC_011012

Expression Profile

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