RNA id: TCONS_00022237


Basic Information

Item Value
RNA id TCONS_00022237
length 1338
lncRNA type inter_gene
GC content 0.27
exon number 2
gene id XLOC_011004
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45012914 ~ 45014480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAAAGGGGTGTTCATTCTCTCATGAAAACAGCTGAATAAAAGAGTTTAGCCCACTGGAGTTTCTCTCCAGCATTATGTGCCATTTTCTCACCTGTATCCTATTACCTGTGCAGTAGAGGCTCTTTATCAGACTGATGTCTTGGATGTTGCTGACGAGGAATCAAAGCAGCAATTAAACTCTCCAGCCATCTAATGGAGCAGGTTTTTTGCAAGCTGTgcaattttatttcaaaatatcttctctttagTTTTAAGGGCTACTATTAACTAAACTGTTGCAGACAAATATGTTGAAACATAGTTTTgatcttttgattttttttttttttttttttatgttacagcggtattgttacatttagttttgctgttacacatttgttttgttgtcagtttttactctttttttttttttaactcctgtaaatattcatttgatctgttgtttttctttcagatattttttatttactttgaacATTTAACAaactcttttctttcttttgcattattagtttttattgcaGAACTTGTtgcttttgaatgttttttaaactttCTTTAGGATGTTTTTGCATTTATCTAAAGATGATTTTCTTGGGGTTTTTTTAACAAAGTTttgtttgttacaatgtattCTCATTCTGTAAATGTTTCAGACTTTCTTTTGAACTTCTGACAAACTCCTTTAAACACTTTTAGTACATTTAGTTTTGCTgataaacttttgttttgtcgTCAGTTTTTACTCTTCTAACAGACTCCTGTAAATGTTCTGATCTGTTTCTTgttctttaaatgttttctttggtTTCTTTTGAAATTCTAAAACACTCTATTTATCTGACTCTTGatttatttagcattattagtttttttttgtttgcataacttGTTGCTATTGaatgttttcaaactttttcaatCTTTAAAACTTGTCTTGTGGATAtttttttcttgctttgtttATTTAAGAAAGTTTTGTTGTTATAATATTTTCCCATTCTTCAAATGCTTTCAGACTTTCTTTTGAACTTTAATTCATTCAAACACTTAATATTTAATAGActctttatttatctttttttttttttttgcacaacattTTGCTAACAAatgtttttcaaacttttttttaatctttacaaCTTATCTTTTGatctttattttcttaatttgtttttagGAACGTTTTTTTACAATAAGTCTCATGCTTCAAatgtttttagactttttttcttttggtcTTCTAACAAACTACTTTAATCATGTttgttacatttagttttgttgactttttgttttgttgtcaaTTTTACTCTTTCTGTAGACTCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021492 lncRNA downstream 339154 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00021491 lncRNA downstream 344154 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00022236 lncRNA downstream 717365 44222299 ~ 44295549 (-) False XLOC_010993
TCONS_00021484 lncRNA downstream 717424 44224076 ~ 44295490 (-) False XLOC_010993
TCONS_00021485 lncRNA downstream 717424 44257469 ~ 44295490 (-) True XLOC_010993
TCONS_00022238 lncRNA upstream 73491 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00021519 lncRNA upstream 213623 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021835 lncRNA upstream 213964 45228444 ~ 45230712 (-) False XLOC_011018
TCONS_00021524 lncRNA upstream 301710 45316190 ~ 45322513 (-) True XLOC_011021
TCONS_00022239 lncRNA upstream 777905 45792385 ~ 45795127 (-) True XLOC_011023
TCONS_00021502 mRNA downstream 11072 44983613 ~ 45001842 (-) True XLOC_011003
TCONS_00021501 mRNA downstream 67690 44920012 ~ 44945224 (-) True XLOC_011002
TCONS_00021500 mRNA downstream 112608 44881829 ~ 44900306 (-) True XLOC_011001
TCONS_00021495 mRNA downstream 134659 44788331 ~ 44878255 (-) False XLOC_010999
TCONS_00021496 mRNA downstream 134659 44796996 ~ 44878255 (-) False XLOC_010999
TCONS_00021504 mRNA upstream 4969 45019449 ~ 45042236 (-) True XLOC_011006
TCONS_00021505 mRNA upstream 30162 45044642 ~ 45069882 (-) False XLOC_011007
TCONS_00021506 mRNA upstream 30171 45044651 ~ 45058919 (-) True XLOC_011007
TCONS_00021507 mRNA upstream 63113 45077593 ~ 45080812 (-) True XLOC_011008
TCONS_00021508 mRNA upstream 73330 45087810 ~ 45094599 (-) False XLOC_011009
TCONS_00021499 other downstream 135595 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021472 other downstream 1381673 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 1457335 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 1977623 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 2118404 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021503 other upstream 3944 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 90133 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 116441 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 126378 45140858 ~ 45144372 (-) True XLOC_011012
TCONS_00021514 other upstream 159966 45174446 ~ 45174560 (-) True XLOC_011015

Expression Profile

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