RNA id: TCONS_00021506


Basic Information

Item Value
RNA id TCONS_00021506
length 1343
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_011007
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45044642 ~ 45069882 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAATCCACACTCTTGCAATAATGTCTGAGCTTTGTGTTGGAATCAATGGATTTGGCCGTATTGGCCGTTTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATTAAAGTCACCGCCATCAACGACCCCTTCATTGACCTGCAGTACATGGTCTACATGTTCAAGTATGACTCCACTCATGGCCGTTACAAGGGAGAAGTTCACATGGAGGATGGAAAACTGATTGTTGATGGTCAGGCCATCTCTGTGTTCCAGTGCATGAAGCCTGCTGAGATCCCATGGGGTGATGCTGGTGCCCTGTACGTGGTCGAGTCCACCGGAGTCTTCCTCAGCATTGATAAGGCCTCAGCTCACATCCAGGGTGGAGCCAAGCGTGTGGTTGTGTCTGCTCCATCACCCGACGCACCCATGTTTGTGATGGGAGTCAACCAGGACAAATATGACCCCTCCAGCATGACCATTGTCAGCAATGCATCCTGCACCACTAACTGCTTGGCTCCTCTGGCTAAAGTTATTCATGACAACTTTGGTATTGAGGAGGCTCTCATGACCACAGTTCATGCCTACACCGCCACACAGAAGACTGTCGATGGCCCCTCTGCCAAGGCATGGCGTGATGGACGTGGCGCCCACCAGAACATCATCCCTGCATCCACTGGTGCCGCCAAGGCTGTGGGCAAAGTCATTCCTGAGCTTAACGGAAAGCTGACTGGTATGGCTTTCCGTGTGCCAGTCGCTGATGTGTCCGTTGTCGACCTCACCTGCCGCCTTACAAGGCCCGCCAGCTACGCCAACATCAAGGAGTCTGTCAAGAAGGCCGCTCATGGGCCAATGAAGGGAATTCTGGGATACACAGAGGATTCAgTCGTTTCTTCTGACTTTGTTGGAGACACTCACTCTTCAATCTTTGATGCCGGCGCTGGCATCTCCCTCAATGACAACTTTGTCAAGCTCATCTCCTGGTATGACAACGAATTTGGCTACAGCCATCGTGTTGCTGACCTGTTAATGTACATGCACTCCAAAGAGTAACTCCGCAGAAAAGCCAGACCATTCCTTCTTTTCAACGCACTCATTTCCTAGCTAAAGCCATCGTGACACACCTTAGCATTCCTGTTCCCACCTACGAGACGCTGCATTCGTCTCTGtagatgtctgtgtgtgtgtgtgttagtttctTTTGACAGTATTTGTGTCAGTGTCACTCCACAGGCATTGCTGTAGTTGTTGCCATTTTGGGTGTAATCACGTTGTGTTGGTGTAAAGAGAATAACCGAATAAAGTTTAATGAGGTATAAAGGCTACTGTAATGcagtttaaaaaagaaactaattaaaatgtttgg

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051287 NAD binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

ZFIN:

id description
ZDB-GENE-020913-1 Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; digestive system; female organism; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDHS (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic).

Ensembl:

ensembl_id ENSDART00000177134

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022237 lncRNA downstream 30171 45012914 ~ 45014480 (-) True XLOC_011004
TCONS_00021492 lncRNA downstream 370891 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00021491 lncRNA downstream 375891 44665604 ~ 44668760 (-) False XLOC_010996
TCONS_00021484 lncRNA downstream 749161 44224076 ~ 44295490 (-) False XLOC_010993
TCONS_00022238 lncRNA upstream 29052 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00021519 lncRNA upstream 169184 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021835 lncRNA upstream 169525 45228444 ~ 45230712 (-) False XLOC_011018
TCONS_00021524 lncRNA upstream 257271 45316190 ~ 45322513 (-) True XLOC_011021
TCONS_00022239 lncRNA upstream 733466 45792385 ~ 45795127 (-) True XLOC_011023
TCONS_00021504 mRNA downstream 2415 45019449 ~ 45042236 (-) True XLOC_011006
TCONS_00021502 mRNA downstream 42809 44983613 ~ 45001842 (-) True XLOC_011003
TCONS_00021501 mRNA downstream 99427 44920012 ~ 44945224 (-) True XLOC_011002
TCONS_00021500 mRNA downstream 144345 44881829 ~ 44900306 (-) True XLOC_011001
TCONS_00021498 mRNA downstream 166406 44814729 ~ 44878245 (-) True XLOC_010999
TCONS_00021507 mRNA upstream 18674 45077593 ~ 45080812 (-) True XLOC_011008
TCONS_00021508 mRNA upstream 28891 45087810 ~ 45094599 (-) False XLOC_011009
TCONS_00021512 mRNA upstream 90436 45149355 ~ 45152169 (-) True XLOC_011013
TCONS_00021513 mRNA upstream 113874 45172793 ~ 45178430 (-) True XLOC_011014
TCONS_00021516 mRNA upstream 143683 45202602 ~ 45225520 (-) False XLOC_011017
TCONS_00021503 other downstream 26111 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021499 other downstream 167332 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021472 other downstream 1413410 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other downstream 1489072 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021462 other downstream 2009360 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021509 other upstream 45694 45104613 ~ 45106574 (-) True XLOC_011010
TCONS_00021510 other upstream 72002 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021511 other upstream 81939 45140858 ~ 45144372 (-) True XLOC_011012
TCONS_00021514 other upstream 115527 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021515 other upstream 127754 45186673 ~ 45193152 (-) True XLOC_011016

Expression Profile

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