RNA id: TCONS_00021524


Basic Information

Item Value
RNA id TCONS_00021524
length 874
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_011021
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45303096 ~ 45327616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAACCTGAGCTGAGGCTGTGGAGTTTGGACTACAGGGACTATGGGGAGTATTTCTGTGTGGCCCGAAACCCGCTCGGCACAGACCGGTCCAGACCTGTTCTGCTGAACCTCACCTACCCGCCCAAAAACACAAGGATCCTCATCAGTCCTAAAGGAGACATCATGGAAGGCTTTTCAGTCAATCTGACCTGCAGCAGCAACGCTAACCCTCCTGTGCTGAAATACGCCTGGTATAAAGTGAACGGTGGGCAACCCTGGACTAAAGGCACGGCGCAAAATCTCACTTTCTTCAGTGTGCGTTCCCATCATGCCGGACAGTACTACTGCACTGCTTGGAACGCATTTGGCATGGGGACGTCGCCTACTATTTCCCTTCCAGTGCTTTGTAAGTTTACACCTATTAGGGATCACAAATTAGctcaaactacactgtaaaaaatgcagggttccacaccgttccttcatgttgtctcatcacaaatagattaagttaacttaaaaaatttttacaaaatattttacaaataagtggattgaacataaaacaattaagttgtccataAAGCAGCAAGTTTGAgtgtacacagcaaaatatggggacccaaaacaactctatgggtgttaatttcaacactttgaaagtgtctcatggggtccactcaaaacagacttaaatcaacactttcaaaagggttggcacattgacaccaaagtaagggttaattttaactctgggcagagttaaaaaatgtaactatatttaacaccacctggtgtaatatattgttattttattcaactttcttgagtgtaaatatggtaaaaaggtcaaatagactgtaaattacaaaataaaaaacattttatttgaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4630 No description available

Ensembl:

ensembl_id ENSDART00000170517

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021519 lncRNA downstream 80243 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021835 lncRNA downstream 85478 45228444 ~ 45230712 (-) False XLOC_011018
TCONS_00022238 lncRNA downstream 217484 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00022237 lncRNA downstream 301710 45012914 ~ 45014480 (-) True XLOC_011004
TCONS_00021492 lncRNA downstream 642430 44669393 ~ 44673760 (-) True XLOC_010996
TCONS_00022239 lncRNA upstream 469872 45792385 ~ 45795127 (-) True XLOC_011023
TCONS_00022240 lncRNA upstream 659960 45982473 ~ 45984353 (-) False XLOC_011027
TCONS_00022244 lncRNA upstream 659960 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00022246 lncRNA upstream 659960 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00022248 lncRNA upstream 659960 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00021522 mRNA downstream 27591 45249055 ~ 45288599 (-) True XLOC_011020
TCONS_00021518 mRNA downstream 80243 45228101 ~ 45235947 (-) False XLOC_011018
TCONS_00021520 mRNA downstream 86106 45228758 ~ 45230084 (-) True XLOC_011018
TCONS_00021516 mRNA downstream 90670 45202602 ~ 45225520 (-) False XLOC_011017
TCONS_00021517 mRNA downstream 106506 45207587 ~ 45209684 (-) True XLOC_011017
TCONS_00021525 mRNA upstream 41640 45364153 ~ 45398408 (-) True XLOC_011022
TCONS_00021526 mRNA upstream 474089 45796602 ~ 45854882 (-) False XLOC_011024
TCONS_00021527 mRNA upstream 474513 45797026 ~ 45854882 (-) True XLOC_011024
TCONS_00021528 mRNA upstream 581640 45904153 ~ 45910050 (-) True XLOC_011025
TCONS_00021529 mRNA upstream 590134 45912647 ~ 45917683 (-) False XLOC_011026
TCONS_00021521 other downstream 70448 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 123038 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 141630 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021511 other downstream 171818 45140858 ~ 45144372 (-) True XLOC_011012
TCONS_00021510 other downstream 181711 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021532 other upstream 894295 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021533 other upstream 1018030 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021580 other upstream 2620630 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 4672965 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 5316157 50638670 ~ 50638786 (-) True XLOC_011073

Expression Profile

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