RNA id: TCONS_00021537


Basic Information

Item Value
RNA id TCONS_00021537
length 1860
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_011034
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46518114 ~ 46525155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTTCCGGACCAAAGTCGGGAAGTTGGtaccttcttttttgtttaaaagaacCGGTTCACAAATTCAATTCACTGATTTCATTGCGTCATCGCGTAAATTCGGTTATTTACAACCCTAAAAGTAGTTTCTATTTACTTTAAACAGTGCAGTAATGTATTTAAATCTGTGTTTTAAAGAAAGCCTTTATTAGGTGGTCGGCTGTCTGAATGAAACGCTGTGATGCAGTCTGTGACGATGCAGTTTGTGAACTGATTCAGAAGATCTGTTTAAAGTAACCGACTCAACAGAACGATTCGTTCACTAACAACGCCATTTGTGTTTTATTCGTAACAAGAAGTTTGTTGTCGAACTCTGAGGTTAAACTCGAACAAAGTTTTGAAATCTCCCCCGAATCCTGCGAGTGTTAGTACCACGCAGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGCCATTGTATTTGGAATCGTGACTATTCTTACAGCTTGGTTTCCCAGTTCTTGTCTGCTGGCCTTCACACTGCTTCTGAATGTAGTCAGTGGTGCGCTGGCCATCACAACTGTAGTCATGTGTTCAATAGACCTGGTCAGTGGAAATTATCTATACTGCAATGATTATTATGATTCTTCAACACCTTCCCCTGAACAGAGGAGTGATAGAGAGACCTGCATGAAATACATGGAGACCAATCAGATGATCACTGGAGGTCTGGATATCATGATAATGGTGTTGTCGGTGCTTCAGCTCTGTGTGACCATTAGTTTCTGTGTTCTGACTGGGaaagttttgtgcacgaaaaCAGAGGATGCAGAGATGGTGAAGGATCCAGAACTTAACAAGCCGCTGCTGGAGGATGCCATTGCTGCAAATTAGACAGAGAACACACAAAACAACACGTATATGCAGTATATACAGCCGCACTCAGTATAACAGTGAGATGTTTTACAGCTTTATACAGTACATGTTTTATACCAGGCGTTTAGGTAACTTCTTAAAATAAGAGCCTGCAATTCAAAGTAAATGCCTTGAGCACTTTAGCATcaccttttttatatattttttgcacttATGGTATTTTGACTTCAAAGCTGACCAAGATGGAGTGAATTTTCTCCTTAATCTGACATTTTGGAAATCTGCTGATATCCACTATTCAGTTTATAAATACTAAGCCTtaccaaacatttttaacaaatttacaaCATGACTGAATTTAGATCAAATACCAGATGAATCATTTTGCTGCGTATTTGCACAATTTCACCACCAGGCGGTGCTGAGAAATTGTCAGTTAAATCATTTGCCTTTCAGAGATGAAAAAAACCCTATTTGACAACATAAAAGATATTTGTATTACTTTCTATAACGGTTTCGTGTTTTACGGTTTTGTTACTAGGTGTTAATGTAAGCATTTATTAATGGCTGGGCTTGCATTATACTTTTTGCTGCCACATTTAACGAAATATGCTAAAAAAAAGAGAGTTCTTGTAAGTGATCTCATAAGCACCTTATTCTATAAAGGGccacaaaataaaatacactttttgaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080829-11 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM176B (transmembrane protein 176B).

Ensembl:

ensembl_id ENSDART00000169940

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022263 lncRNA downstream 58264 46434901 ~ 46459850 (-) True XLOC_011033
TCONS_00022262 lncRNA downstream 58393 46396002 ~ 46459721 (-) False XLOC_011033
TCONS_00022261 lncRNA downstream 69351 46396002 ~ 46448763 (-) False XLOC_011033
TCONS_00022260 lncRNA downstream 86964 46396002 ~ 46431150 (-) False XLOC_011033
TCONS_00022259 lncRNA downstream 87028 46396002 ~ 46431086 (-) False XLOC_011033
TCONS_00022265 lncRNA upstream 96068 46621203 ~ 46622443 (-) True XLOC_011041
TCONS_00021556 lncRNA upstream 115001 46640136 ~ 46645396 (-) True XLOC_011042
TCONS_00021836 lncRNA upstream 271277 46796412 ~ 46798742 (-) True XLOC_011045
TCONS_00022266 lncRNA upstream 281102 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021837 lncRNA upstream 281122 46806257 ~ 46810172 (-) True XLOC_011046
TCONS_00021529 mRNA downstream 600431 45912647 ~ 45917683 (-) False XLOC_011026
TCONS_00021530 mRNA downstream 600792 45914480 ~ 45917322 (-) True XLOC_011026
TCONS_00021528 mRNA downstream 608064 45904153 ~ 45910050 (-) True XLOC_011025
TCONS_00021526 mRNA downstream 663232 45796602 ~ 45854882 (-) False XLOC_011024
TCONS_00021527 mRNA downstream 663232 45797026 ~ 45854882 (-) True XLOC_011024
TCONS_00021542 mRNA upstream 5109 46530244 ~ 46567136 (-) False XLOC_011035
TCONS_00021543 mRNA upstream 28845 46553980 ~ 46558521 (-) False XLOC_011036
TCONS_00021544 mRNA upstream 30668 46555803 ~ 46558708 (-) True XLOC_011036
TCONS_00021545 mRNA upstream 37549 46562684 ~ 46567344 (-) True XLOC_011035
TCONS_00021546 mRNA upstream 42273 46567408 ~ 46573211 (-) False XLOC_011037
TCONS_00021533 other downstream 177457 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 301205 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 1272372 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 1324962 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 1343554 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 1418008 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 3470343 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 4113535 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 4410055 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 4436111 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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