RNA id: TCONS_00021543


Basic Information

Item Value
RNA id TCONS_00021543
length 2613
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_011036
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46553980 ~ 46558708 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAGTTCCAGTGAGATTTCTCTGCGTCTTTGTGCTTCTGCTGCACAAGAGCTTTCAACAACAAGCGTTCAATGATAAGAAAGAACTCAAGCTCAGTGCTAAATATAAAATCGGCTGGATGAGGTCTCTGGATGATAATAAGTTAATTTCTGAAATCAATATTCCTGGTACTCACGACACCATGGCTCTTCATGGAGGACCAGCAGCAGAATGTCAGTCATGGTCACTGGAGAACCAGCTGCTCGCCGGCGTACGCTACCTGGACTTGAGAGTGTCTGGAAATAACCTGAAAGTTGTGCATGGTGTGATTTCACAACATACAACGTTCGCTAATGTTCTCAACATAGTTAAGGGTTTTTTGTCTCAACATAAATCAGAGACAGTGTTGCTAAGAGTCAAGCTCGAGTCAAAGGGCCCATTTCCAGACGATGTTGCAAATCAGCTTAAAAATGATCCTGGATGTTGGGTTAGAAATAAAATACCGCGAATTAGAGAAGTAAGAGGAAAGATTGTTTTTGTTCAGAAAAACAACTTTAAACTGGGAATCCCTATGTTAGAAACTGATAAAAAGGGTGACTATAAAGTAGGTAATGTTGAAAACAAGAAGGATAAAATTATTGAGCATCTGAATCAGGCTTTGGAAGCTTGTAAAGTGAATGAAGTTGTGCTAAACTATTCAAGCGGCACAGGCTGGCCTGTATTTAGACCAGACAAAACCCCAAAGAAAGTGGCCAAAAAAATCAACCCTTGGCTATACAATAATCTTGAAGGCGCttctaaaatgtatataaagCTTTGTTTTGGGGTCATAGCAATGGACTTTCCAGGCTTTGATTTGATTCAAGTGATCATTGGTTTTAACAGATTTTAATGGGTGTTTAGCTTAGAGCCCTGCATTTGAGCCTGAGCCTGCTTTAGAAGAAACTGCAAAACAAAGTTTAATGAGGCAAGTTTGAGATTTCCAGCAAAGTGCAATAGAtagcataaagaaaaaaaatggcaaaGGCGAACTTAAAACTGAAAAAGTCAGGCAAACTTCTGGTCAACTTTTCAAATAGTgaaaactttaaatgatgagagaGCTCGTCATGCACAATGCACAACTTGTAAGTTGAGTAAACCCACTGTGGACCACATACCTGTACCGCTTGGATAtcaatttcacttttaaaaaaataaagcttgcATTAAAAAAACTCCAAACATTTCTCTAAATTATTctgataaaaaaatgaaacaaaaaaactttttattaaatacaaataaggTCTTTTTTATGGCTGTAACATTATTTGGTGGAAAAAAGACAGGCTTATGTCGGACTTGGGCCAAAAATTTTGATAAGGTATTGGACAAAGGCAGGGCTACAGCCTGTGCATCTCGGGCCAGGGCTCAAATTTAAAGGGCTTTAGTTTAGCTGTAATTTTCTGTTCATTACAGTGCATTTGTTAACTAAGCAATCACtttgtgtaaaataatgtttgtatttGCTGTTATGCCAttgaaaaagcattttaatccatcTTTTATTGTTTTGCTCTGCTAATATTTCTGCTTCAGGgtctctttcatttttttttacctttacaaGAGCAgcagttgaaaaaaataaattcttcTTATAAGTGAATTCTTTCCTCTCTcatttatttataacatataTAACAAGTGGTCTAGTCACAGATCGGTATAAACCCATCAGCAAATATGCACTTTTCTGTGATTTACAATGCATTTGTAAGTAAGTTATTGATTTATGAACATCTTTATGTACTGTTTAAAAAGAGGACCTTTAGACATTGCTTTGCAATGCTCCTGATGGATGAGTGGAGGAGTCTCTTTAATCTCTCGGGGTGTAAACCATTCATGAACCTTGTTACTCGCACATAGAGCTGAGATTATCCAAAACAAGCTTAACAAATTCTatttcattgtaatgttttcattgaatgagagaacagaataatttttacATAATCGGGATGTAAATAATCTTGACTTTAAGACTGGTTACTCAATagtcttgttcaggcacattcagttTGTTTTTGGCagcttatttcagctacattctctaaaacctactaactatgcacatttgttttttctaaaaaaatgcaACCATGAACAACAATATCtttcacatattattgtagcacagtttgtgctgaatacaaaataaacacatgttggccagtaCTATGTAATgagtagctgaaataagcacaaatgtcaggaCATGTCAAAATATCCTTAGAGATATTTAGAGATCTATCAAAGTATCTTGGGCCCCCAAATCACCTCAGCAGAGGGTTAATGTAAAGcaagggtcaccaatcctggttctggagggccggtgaccctgcagtgtttagctcgtagctggtttaggtgtgtttgattagggttggagctaaaatctgcaggacaccggccctccaggaacaagtttgatgacccctgatgTAAAGCattaatgtaaaccttaatgtaaaaCAAACCACTGAAcctgttactaaaattaataaatagaccAACCAAAGTGACTGAACTTTGGAATGAAATATCTGTGATaaacagtgggggaaataagtattgaacatgacattat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022264 lncRNA downstream 28879 46523564 ~ 46525101 (-) True XLOC_011034
TCONS_00021540 lncRNA downstream 32313 46519823 ~ 46521667 (-) False XLOC_011034
TCONS_00021541 lncRNA downstream 32313 46520920 ~ 46521667 (-) False XLOC_011034
TCONS_00022263 lncRNA downstream 94130 46434901 ~ 46459850 (-) True XLOC_011033
TCONS_00021536 lncRNA downstream 123117 46397661 ~ 46430863 (-) False XLOC_011033
TCONS_00022265 lncRNA upstream 62682 46621203 ~ 46622443 (-) True XLOC_011041
TCONS_00021556 lncRNA upstream 81615 46640136 ~ 46645396 (-) True XLOC_011042
TCONS_00021836 lncRNA upstream 237891 46796412 ~ 46798742 (-) True XLOC_011045
TCONS_00022266 lncRNA upstream 247716 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021837 lncRNA upstream 247736 46806257 ~ 46810172 (-) True XLOC_011046
TCONS_00021538 mRNA downstream 28825 46518670 ~ 46525155 (-) False XLOC_011034
TCONS_00021537 mRNA downstream 28845 46518114 ~ 46525135 (-) False XLOC_011034
TCONS_00021539 mRNA downstream 29138 46518760 ~ 46524842 (-) False XLOC_011034
TCONS_00021529 mRNA downstream 636297 45912647 ~ 45917683 (-) False XLOC_011026
TCONS_00021530 mRNA downstream 636658 45914480 ~ 45917322 (-) True XLOC_011026
TCONS_00021545 mRNA upstream 4163 46562684 ~ 46567344 (-) True XLOC_011035
TCONS_00021546 mRNA upstream 8887 46567408 ~ 46573211 (-) False XLOC_011037
TCONS_00021547 mRNA upstream 9833 46568354 ~ 46572834 (-) True XLOC_011037
TCONS_00021548 mRNA upstream 18181 46576702 ~ 46578523 (-) False XLOC_011038
TCONS_00021549 mRNA upstream 18297 46576818 ~ 46579981 (-) False XLOC_011038
TCONS_00021533 other downstream 213323 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 337071 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 1308238 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 1360828 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 1379420 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 1384622 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 3436957 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 4080149 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 4376669 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 4402725 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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