RNA id: TCONS_00021551


Basic Information

Item Value
RNA id TCONS_00021551
length 2294
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_011039
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46583604 ~ 46587938 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAGTGAAGAAGATGGGAGCTCCTATGAAAACTCTCTGTATCTTTGTCCTTCTGCTGCACAAGAGTGCTCAACAACACGTTTTTAACGATCAGGAAACACTCTCTCTGCCTACAAATTATAAAACTGACTGGATGGAAACTCTGGATGGTAATATGTTCATTTCGAACATCACAATTCCTGGCACTCACGACACCATGGCTCTTCATGGAGGAGCAGCAGCAGAATGTCAGTCATGGTCACTGGAGAACCAGCTGCTCGCCGGCATACGCTACCTGGACTTGAGAGTGTCTGGGAATAACCTGAAAGTTGTGCATGGTGTGATTTCACAACATACAACGTTCGCTGATGTTCTCAATATAGTTAAGGGTTTTTTGTCTCAACATAAATCAGAGACAGTGTTGCTAAGAGTCAAGCTCGAGTCAAAGGGCCCATTTCCAGACGATGTTGCAAATCAGCTTAAAAATGATCCTGGTTGTTGGGTTAATAATGAAATACCACAACTTGAAGACGTGAGAGGAAAGATCGTTTTTGTTCAGAAAAAGAACTTTAAACTAGGAGTCCCTCTGTTAGAAACTGATAAAAAGGGTGACTATAAAGTAGGTAATGTTGAAAAAAAGAAAGCTAAAATTATTGAGCATCTGAAACAGGCTTTAGAGCCTTGTGAAGTTAAGGCAGTTGTGTTAAACTATTCAAGCGGCACAGGCTGGCCTTTAGGAAGGTTAGATAGAACACCGAAAAATGTTGCCAAAAAAATCAACCCTTGGCTATACAGTCACCTTGAAGGTGCTTCTAAAGAGAACATCAAGCTTTGTTTTGGGGTAATAGCTATGGACTTTCCAGGTCTTGATTTGATTCAGTTGATCATTAGTTTTAATAAGTAGCTGTGCTACTAAAACCTAACAGCTAATAAGAAGTTGTACTCTCTGTCATGTCAATGATAAGGCATTTCATCATTCACGTGTTTGACTACATATAGAGTGCTCAgaatatatgagtacacccctcacacacccaggctcattctgattatgtaccccctatacatttctgaagagcactaaatacgtcccaggagctatggttttttttttttgtgtgcagtttTTCATTtgcgcgaatccaccagagaccactgtggatgctttttgagatctcaaatttcttttgcgagtGCATTCGCGCATgcttttctcatgtaaatccactagaggctgctgttgacagactgactgaccaactgattgATCATCCCAcccccaactgatagtgttttcaaaagcaccgattgacctgctcACCCACcgtaaacccaaccgacaatgtTTTGAAAACCAAGCCAGAAAAGAAAAgcctgcctgatttttaccacattttcagattttaccacattctcaccctgttatttacttgcttattttatttttggcttttttttgtttgtttgtttgttttatctgcttttTTGAAACCATTCTTTGCAGAACTCaatgtcaactcctctctgcgtctcaaatcctcCAATGTATGcaacaagccactggacaaacttgtTGCCGtctatatggaggtaagcggtcagctggtcaGCATGAAAAGGAACAGTCTCATACCGctccgtagcattcgttttaaagacgaaatgcagccacacgtacttctgactacataattcgggatcgccagaaatgtatatagggctacgttttcagaatgatcctatCGTTCACAAATCTACCtgctaaattaatattttctagaGAATGCTTTAGattatgtgtgcatatttattaaatttgtgagtgctgaagccaaatctggagctacaATTACATAATAAGTGTCCAGAAATGAGTAAACATTTATATATGAgggaaaatattacataaaatgttttaaaagagtaaaaatccagagaaacaaaaaaattattatagttAAAATGCTGTTGTCTTTtgcaatatttcatttcatttgaattaaaatgtgttatctttatttataaaaatgtctgGTGATCAAACTCTTTACTTTaatgaatatatctgtttaataaatctgttttgttcaaatgcattaACAattattacctatattcactcagaagtggataaaaatattcattttcaggatggggtgtactcaattgtgctgagcactgtatactttttaattttctggttgtgttttctttctttcttatcttTAAACTGTGTAATCTTGATGGCATCAGTTGAATAAAGCATTACAAAAACTTCTAATGAGTGACGCTTTCATTCAGGTAGTGCAGGGGCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181433

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022264 lncRNA downstream 58503 46523564 ~ 46525101 (-) True XLOC_011034
TCONS_00021540 lncRNA downstream 61937 46519823 ~ 46521667 (-) False XLOC_011034
TCONS_00021541 lncRNA downstream 61937 46520920 ~ 46521667 (-) False XLOC_011034
TCONS_00022263 lncRNA downstream 123754 46434901 ~ 46459850 (-) True XLOC_011033
TCONS_00021536 lncRNA downstream 152741 46397661 ~ 46430863 (-) False XLOC_011033
TCONS_00022265 lncRNA upstream 33265 46621203 ~ 46622443 (-) True XLOC_011041
TCONS_00021556 lncRNA upstream 52198 46640136 ~ 46645396 (-) True XLOC_011042
TCONS_00021836 lncRNA upstream 208474 46796412 ~ 46798742 (-) True XLOC_011045
TCONS_00022266 lncRNA upstream 218299 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021837 lncRNA upstream 218319 46806257 ~ 46810172 (-) True XLOC_011046
TCONS_00021549 mRNA downstream 3623 46576818 ~ 46579981 (-) False XLOC_011038
TCONS_00021550 mRNA downstream 3668 46577257 ~ 46579936 (-) True XLOC_011038
TCONS_00021548 mRNA downstream 5081 46576702 ~ 46578523 (-) False XLOC_011038
TCONS_00021546 mRNA downstream 10393 46567408 ~ 46573211 (-) False XLOC_011037
TCONS_00021547 mRNA downstream 10770 46568354 ~ 46572834 (-) True XLOC_011037
TCONS_00021552 mRNA upstream 8268 46596206 ~ 46619967 (-) False XLOC_011040
TCONS_00021554 mRNA upstream 11705 46599643 ~ 46605160 (-) False XLOC_011040
TCONS_00021553 mRNA upstream 11705 46599643 ~ 46605160 (-) True XLOC_011040
TCONS_00021555 mRNA upstream 51834 46639772 ~ 46645396 (-) False XLOC_011042
TCONS_00021557 mRNA upstream 61531 46649469 ~ 46660741 (-) False XLOC_011043
TCONS_00021533 other downstream 242947 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 366695 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 1337862 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 1390452 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 1409044 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 1355205 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 3407540 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 4050732 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 4347252 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 4373308 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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