RNA id: TCONS_00021564


Basic Information

Item Value
RNA id TCONS_00021564
length 6047
RNA type mRNA
GC content 0.39
exon number 12
gene id XLOC_011050
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47348766 ~ 47381652 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTATTGTCGatttctgctttatttttatcTGCTGTATTTCGGCGCGTCGTTTCGCGTTATAGCCGCGTCTTCTCAAGGAAACGACAAAGCGCCGAAAAATCTACATTTAGTGAAGCGAAACGCAATTAAAACCAGGCCCAGCGATGCTCTTGGAGGGCTTGAACCCGGTGATCCCGCTCCTGCATTTCAGGTGCACACTCTGGACGGAATGTTTGTTTACAGTCCTCGGAATGAGTCAGGGCGCGCGCTCATCGTGCACGCGTTCACCAATAAATCCGCTTTCCTCGAGTGTTTGTGGACGTGGAGCGAGTCTCTGTCGGACCTGCTGGATTACCTGCCGTCCAGCACTGAAGTTTTAATGCTGTCCATGGATGAGACTGCTGAACAGGACGCCCTCTGGATGAGGGAACAGGTGTACAGAGCCGCTGCTCACAGAGGAAAGGAGATTTTATCCAGACTGCATTTCTCCCCAACGCATGTGTACAATCTTGGAAACTGGATACCTAGAGTTCTGTACTCATGGGGATGTGGAGGACATAACTGTGGCCTCGGTCAGGTTGTTTTTTCCTCTCCAGACTGGAAGGGGCCTGTGATCGGCAAGCGTCTGAATGCCCGATATGACTGGCTGTACGCCCACTGGAGTACAGATCCATACAGACTGCTGGATGTTGGCGATGGATGTGCACCTGTGGCTTCTCTCAAAGGAGCTGTCGCTTGGGTATCAGAGGGAGGATGCTCTTTCTTTACTAAGATTAAAAACATGGAGAAGTCAAACGCTACCGGGGTGTTGGTGTATGCCTTGCCTGGAAATAACATTCAGGACATGAACTGCAAAGGGGATGAATGTTTTACTTCACTCCATATACCTGCATCGATGGTTCATTTCCAACCCAAAGTCAAAGAAGCCCTACAaAAGGGGAGGCCTGTTAATGTGAAGTTCCAGGTCACACCTTCACGAAGCTTCTTCTTCGGGATTGACCAGAGGGGGGTGCTTTCTGAGATGGGCTGGTTTCTTTACCCATCCTTTAGGTTCATGGCCTGGCAGGCTCAGTGgtTTGTATTCAATGATGCTTTGCTGGAGCAGCTGAGTCAGCCTGCAGTTACAGTGTCCGTGTTTGATCATCATGATATGCATGGAAATGCAGGAGCTCATGCTGTGGTGGATCTTCCTGCAGACATATCACCTTATGATGTCCTGGAGCTGGACACGTCTCTATCCTGTCCGGGCCGCAGAGATGAGACGTGTGCTCATTGGGATCACACAGTGCAGCTGTTCGTTTGCTGCAATGACAGCAGTCCCTATTGCAACCAGGAGCTCGGCCGCTGGGTAACAGCCTTCCGCAGAGGCACAGGCCATTGGCTGACAGACGTGTCTGCTTTGATTCCCCTGCTGAATAACAAGAAATGCTCCTTCACCATGAAGACTGCGCCATGGGCAATGCCATGGATGACTACTCTCAATCTGCGCTTCAGTCAGAGCAATAAGACAGAAAGACTGTACCCTTTCGAGGTGATGCCGCTGTTCAATGGAGGGACGTTTGATAAGGACTATAACCGCAGATACCATGAGATCACCTTTAGTATTCCAGCTGCAACAAAGAAGGTGGAGTTATATGCTGTTATTACCGGTCACGGCTCCGATGACAACAACTGTGGGGAATTTTGTGTGACGTCGCATTACTTCCTGATCAACAGATCCATCAATAACACCCTGGTATTCGAGGCAGCTGGATCTCCTCTGGGCTGCTCCCTGCTGGTGCCTAAAGGAGGAGTGCCGAATGAGTGCGGCACTTGGCTATATGGCCGTGGCGGCTGGTGTGATGGACTACAAGTGGATCCCTGGAGGACAGACATCACTTCAcagcTGGACATGAGTGGATCCAATTCGGTCCGTTACTTTGGACTCTTTGAGGGACGAGACCCAAATCCAAAGACTGACCCCGGGAATATACTTATGTACTCCTATCTAGTGTTTTATCAATGAATGTATTAATGGAAAATTAACCAAAGCACTTTTTTTCATTATCGCTCAATCATTCAGGATTTTTTAGTATTCCCTCatgatgctgttttttttttaagcaacagGTTATTGTTCAAGTGCAATTTGACTACTCCGATTAGACAATCTGGACATCACTTTATAGACTCATACGTTGGCAggtatttttcaaataaaatttttcCATGTGAAATACAGATGTCTcggttcttttatttttttaaatgaatattgcgATTTTATATTTGAATCTATAACCATACAAAATTAATTTAAGTGTTCTATAATGTTTGTTACGAATTCTAATCTTGCTTGGCTCCACACAGCAAGCCAGACctgtaacaataaataatattaaaaaaaaaaaattagagctCCTCTAAATTAATGAGGAgcccagagtctcatctcccgtatcaaagaaaaaacaacaaagatAAATGACCAGGGAAAATGATGTAAAATCAAACTTATTTGACGTTTAAAAATCAAAAGGAGACAATAAAAAGCTTGCGGAGGTAAatggcaaaataacaaacaaaactcaaCAACTAACTAAGCTTTTAACCCTCCTACCTgcacatgaaataaaacaaataaaatagcattcacttacctccctactaaccacaaaacatgagaaatgtttaataaaaacaaaaaggcacTCTCCTCAGCACACACGTCTCAAAGTTAACACTCAGCGTTCACTTTCAACAATTTAGCTGAGTAAATACGATGTTAAATATTCCTAATGCAGTGTGTCATTTATAGTATTTCTAGATAATTGAGATGTTGGACGCTGGTCCTGTTTCCAGTTTAGCAGAATGCATTTCCTATAGATGCATCATAGATgaatacattagatgtcgcctaccttgttgttgtctattggaaggaatgcgtcaatagagccgccattttagtacagggtagcactcatttgaaatgaatgcaggaccaaactgcagtggaggactgtggccatccagagccagagaaatACACGGTTATCTATGATTGGAAGTTTTCCCGGAGGTCAgaatggaatttatttatttatttatttattttaattatgaaacttattttacatcccttttctacattgatggatcagtgaccaaACGGGCATTCCTGTCAAAAAGCTTGTTTGCGTGTGTAATGTACTctccaccctccttgttaaattgatctaatcatgtcctgaaacacacctcctctacTGTTTTTCACTTCTTATACTGAcgaagggagcgattcgtttgtgaatgaatctccgttatgagcgactccttcactagccgacgataatacaagtttctggcaccgcatcTTCTAGTTgtcatattttttttgcattgtttgctgattttattcaacaaaactagcataagccgagtgtttagtgcgagttgctgctgctttgccttatgttgaatgcagtaagtgaccgattatcatcaataacgttgcgtatttagcacaaaagttcataacatacaaaaacgtaaaaaactagatcttacctatgaaatgttctgcctttgtgctttgttttatttgtttgctactACTGTAGACAGTCCAGCatccagcatcttcacatagtaacactgtcttgactagtgcggttgaatgacatttgttctgggagcactgtacaattATGGCGGCGCttttgacgcatgctcagggtccttATGCgatatcttgtgtgtgtgtgtgtatttatttatttatttatatataaataaatgttttcatgttcaaaaacatgttcaaatcatgttttcaggacatgattagatcataaatttatttatatatatatataaatatatataaatatatatatagaaattagACCCTCTATTTTAGTAAATAAAGGGTGTGATACCTCATTCAAGAAGATATATTAAAGGAGTCTTGTGACATTTCTTTTTCAGGACcaataattacagttttttttattttattttttttattattttttttatttcatgcgATTATTccaaaatgctcataaaaatagGTAGATGGAAGCACAGCTAGTGCGTCTATGTATCCATTAGATAATAATATTGAAGTACAAATACCACTGTTAAATTGGGAAAAGTCTTACAAAAAGAAATAAACCTCAGTCACTTCTATAATGTCTTCCTACTCTGTCTAATAGTCTTCGTGAAGAGCTTTCATCTGAAGTTTGCTCAATTATATGCAATATTCCAGCAGCTTAACTCAAAGATCAGCGAAATCTTCAGAAAATCGCTTTCCACTTTCAAGCAGTTTTAAGTACCCGATTCTCGTTGACCCAACAAACTTTTAACTTCGCTTCACGGAAATAAAGTATTACAGCGTCTTTGGTGTTCAGCAGCTCCATGCCGAGACTATCAAAGGGGGTGGAGCGTATCCAAGACTATGCAAGAcatgcactgcacaggttgagccctatgtgtacACCTGGTGTTCAGTAACTTTGTCATGGATGTGTTTGCAGATCATTTAAAGctctactgtatgtactgtaaataTCAGTTCATTACTTTGAGAGAGAGAAAGGTTATGATTGTTGTTGGTTTTAAtgactgatttaataactgttgCGTCAGAGGCTGAAGGTGTGCTATCAAGACATGATAAATCCTGCAACGTCACTATAAGATCAAATAAAAGTGTGGAGGAAAGGATGAATAAAGAGATGTGACTGATGGCAAAGGCAGTTTTTTGTGGCTAATATTCGAGAAAATGAGACCAATGTGAGCTAAACCGCAACACTATGGtaagagtctttttttttttttttttttttttctaattattgataatgataatatttattctgctGTGGATGGTTGCATTGCGTGCCATTTCACATTTTTTGCTCTTTCCTTTTAGATTTTTCAGCATTTATTGCTCTTCTGTGGGATGTTGCttggttttacttttgtttttgtttagcccccctgaattattagcccctcggtttattcccccccccccaatttctgtttaacggagagatttcttcagcacatttctaaacataagttttaataactcctctctataactgatttattttatctttgccatgatgacagtaaataatatttgactagatattttttaaaacacttctatacagcttaaagtgacatttaaaggcttaactgggttaattagtttaattaggcaggttagggtaattagacaagttattgtataatgatggtttgttctgtagactatagaaaaatctatagcttaaagggtctaataattttgtctttaaaatggtgtttaaaaaattaaatactgcttttattcaagccgaaataagactttctccagaagaaaaaaatattatcagacatatactgtgaaaatttccttgctctgtttaacatcatttgggaaatttattttaaaaaatacaaagggggctaataattctgacttcaactgtatggtatggtatgtatgtatgtatgtatgtatgtatgtaggtaggtatgtaggtatgtatgtatataggtatgtatgtatgtatgaatgtatgaatgtatgtatgtatgaatgaatgaattggtttTGAAGGCAGAGCATTTACACCTGCacatatttgcttttttttccccatttacaATTCATGGAGTCGCTTTTTAATATTTAGGAAAATAAGACTAACGTGAGCTaaactgttcttttttttcttttttctgtactactactactactactaataataataataataatatccagATATGGATGGTTGCTGGCATGTTTTTCTcattttttgctttcttttctttCAGATTTCTCCACACTTATTACTCTTCTGTGGGATATTgcttggttttgtgtttgttcagCAGCTCGTATATTTAAGGATTGAAGGCAGAACGTTAACACCTGCTCATATTCTTTCCTCTCACGCCAAGAGTCATGCATGGAACAAGAAaggtttgtttattgtttatttcttttttttcattgtcaTTAGTTCGAGCACGCATCTCAATTTTTTGTTCTTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9466 Predicted to enable oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000032188

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021838 lncRNA downstream 55085 47302446 ~ 47304669 (-) False XLOC_011049
TCONS_00022267 lncRNA downstream 55570 47303945 ~ 47304184 (-) True XLOC_011049
TCONS_00022266 lncRNA downstream 549542 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021837 lncRNA downstream 549582 46806257 ~ 46810172 (-) True XLOC_011046
TCONS_00021836 lncRNA downstream 561012 46796412 ~ 46798742 (-) True XLOC_011045
TCONS_00021569 lncRNA upstream 10744 47392263 ~ 47394651 (-) False XLOC_011051
TCONS_00021579 lncRNA upstream 545775 47927294 ~ 47936715 (-) True XLOC_011053
TCONS_00021839 lncRNA upstream 661865 48043384 ~ 48056492 (-) True XLOC_011055
TCONS_00021840 lncRNA upstream 837847 48219366 ~ 48220310 (-) True XLOC_011056
TCONS_00021584 lncRNA upstream 1034455 48415974 ~ 48416763 (-) True XLOC_011058
TCONS_00021562 mRNA downstream 58378 47272825 ~ 47301376 (-) True XLOC_011048
TCONS_00021561 mRNA downstream 114191 47198112 ~ 47245563 (-) True XLOC_011047
TCONS_00021560 mRNA downstream 593601 46760625 ~ 46766153 (-) True XLOC_011044
TCONS_00021558 mRNA downstream 695289 46651655 ~ 46664465 (-) False XLOC_011043
TCONS_00021566 mRNA upstream 8020 47389539 ~ 47427016 (-) False XLOC_011051
TCONS_00021567 mRNA upstream 8754 47390273 ~ 47426482 (-) False XLOC_011051
TCONS_00021568 mRNA upstream 9346 47390865 ~ 47408135 (-) False XLOC_011051
TCONS_00021570 mRNA upstream 26120 47407639 ~ 47426558 (-) True XLOC_011051
TCONS_00021571 mRNA upstream 73067 47454586 ~ 47483142 (-) False XLOC_011052
TCONS_00021533 other downstream 1019097 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 1142845 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 2114012 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 2166602 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 2185194 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 561624 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 2613959 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 3257151 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 3553671 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 3579727 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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