RNA id: TCONS_00021573


Basic Information

Item Value
RNA id TCONS_00021573
length 477
RNA type mRNA
GC content 0.57
exon number 3
gene id XLOC_011052
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47454586 ~ 47483142 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggctgtatatcggcactggtgggaggtgtgcgatGGAACGAGGCcgcaggccaagtgccttagtgcccccaccagtgccgatatacagccatatcgcactgctacgagtGAGTGCACGTTCACTAAACAGTATGCAGACAGTGCTCTGCGTGTGCTGTTCAGCGGCTCTCTGCGGCTCAAGTGTAAGAACGCTTGCTGTCAGCGCTGGTACTTCACTTTTAATGGGGCCGAATGCACCGCTCCGCTGCCTGTAGAGTCCATCATCTACCTGGACCAGGGCAGCCCAGAGCTCAACTCCACCATCAACATCCACAGAACCACATCCGTTGAAGGGTTATGTGAAGGCGTGCGGAAAGGCCTGGTGGATGTGGCGGTCTGGGTGGGAACGTGTGGCGATTATCCGCATGGAGACGCCTCCACCGGCTGGAACTCTGTGTCCCGGATCATCATAGAAGAGCTTCCCCTGAGCAGCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-46 Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).

Ensembl:

ensembl_id ENSDART00000190202

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021569 lncRNA downstream 60077 47392263 ~ 47394651 (-) False XLOC_011051
TCONS_00021838 lncRNA downstream 150059 47302446 ~ 47304669 (-) False XLOC_011049
TCONS_00022267 lncRNA downstream 150544 47303945 ~ 47304184 (-) True XLOC_011049
TCONS_00022266 lncRNA downstream 644516 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021579 lncRNA upstream 461517 47927294 ~ 47936715 (-) True XLOC_011053
TCONS_00021839 lncRNA upstream 577607 48043384 ~ 48056492 (-) True XLOC_011055
TCONS_00021840 lncRNA upstream 753589 48219366 ~ 48220310 (-) True XLOC_011056
TCONS_00021584 lncRNA upstream 950197 48415974 ~ 48416763 (-) True XLOC_011058
TCONS_00022268 lncRNA upstream 1354573 48820350 ~ 48821345 (-) True XLOC_011061
TCONS_00021566 mRNA downstream 27712 47389539 ~ 47427016 (-) False XLOC_011051
TCONS_00021570 mRNA downstream 28170 47407639 ~ 47426558 (-) True XLOC_011051
TCONS_00021567 mRNA downstream 28246 47390273 ~ 47426482 (-) False XLOC_011051
TCONS_00021568 mRNA downstream 46593 47390865 ~ 47408135 (-) False XLOC_011051
TCONS_00021565 mRNA downstream 73076 47367134 ~ 47381652 (-) True XLOC_011050
TCONS_00021575 mRNA upstream 65739 47531516 ~ 47746578 (-) False XLOC_011053
TCONS_00021577 mRNA upstream 65739 47531516 ~ 48074540 (-) False XLOC_011053
TCONS_00021576 mRNA upstream 65739 47531516 ~ 48074540 (-) False XLOC_011053
TCONS_00021578 mRNA upstream 309448 47775225 ~ 48071632 (-) False XLOC_011053
TCONS_00021581 mRNA upstream 816544 48282321 ~ 48400639 (-) True XLOC_011057
TCONS_00021533 other downstream 1114071 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 1237819 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 2208986 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 2261576 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 2280168 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 477366 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 2529701 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 3172893 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 3469413 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 3495469 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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