RNA id: TCONS_00021839


Basic Information

Item Value
RNA id TCONS_00021839
length 491
lncRNA type intronic
GC content 0.35
exon number 2
gene id XLOC_011055
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48043384 ~ 48056492 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgactgggtcagttgacatttctgtgtgaagtttgcatgttctccctgtgttggcatgggtttcctccgggtgctccggtttccaaagaAGTGCTATAGACGAAatgggtaagataaattgtctagtgtatgtcctggtcctccaggttgggggatGAGCGCTGGGCTAACGACCCATCTTGTAAAAATTTGATGTTACGAAATGCCAACATTGTGTGACTAAAATATCAACTTTAATATAAACAGCCCTGGTAcaaactaaataatgagaaagagtaaaaaagaaagagaaagaaagaaataaagataaaaagaaagaaagaaagaaagaaagaaagaaagaaaaaaagaaagaaaaaaagaaagaaaaaagaaagaaaaaaagaaagaaagaaagaaagaaagaaagaaaacaaacaaaagcgaacgaaagaatgaaagagaaaaaagaaagaatgaacaaaagaaagaaggaaTGAAAGAGTGCAAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021579 lncRNA downstream 106669 47927294 ~ 47936715 (-) True XLOC_011053
TCONS_00021569 lncRNA downstream 648733 47392263 ~ 47394651 (-) False XLOC_011051
TCONS_00021838 lncRNA downstream 738715 47302446 ~ 47304669 (-) False XLOC_011049
TCONS_00022267 lncRNA downstream 739200 47303945 ~ 47304184 (-) True XLOC_011049
TCONS_00022266 lncRNA downstream 1233172 46806237 ~ 46810212 (-) False XLOC_011046
TCONS_00021840 lncRNA upstream 162874 48219366 ~ 48220310 (-) True XLOC_011056
TCONS_00021584 lncRNA upstream 359482 48415974 ~ 48416763 (-) True XLOC_011058
TCONS_00022268 lncRNA upstream 763858 48820350 ~ 48821345 (-) True XLOC_011061
TCONS_00022269 lncRNA upstream 1099368 49155860 ~ 49184484 (-) True XLOC_011062
TCONS_00022270 lncRNA upstream 1158986 49215478 ~ 49222093 (-) True XLOC_011063
TCONS_00021575 mRNA downstream 296806 47531516 ~ 47746578 (-) False XLOC_011053
TCONS_00021571 mRNA downstream 560242 47454586 ~ 47483142 (-) False XLOC_011052
TCONS_00021581 mRNA upstream 225829 48282321 ~ 48400639 (-) True XLOC_011057
TCONS_00021582 mRNA upstream 352574 48409066 ~ 48430272 (-) False XLOC_011058
TCONS_00021583 mRNA upstream 353092 48409584 ~ 48428035 (-) False XLOC_011058
TCONS_00021585 mRNA upstream 588725 48645217 ~ 48673938 (-) True XLOC_011059
TCONS_00021586 mRNA upstream 734734 48791226 ~ 48914757 (-) True XLOC_011060
TCONS_00021580 other downstream 100127 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021533 other downstream 1702727 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 1826475 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 2797642 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 2850232 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021592 other upstream 1938986 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 2582178 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 2878698 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 2904754 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021614 other upstream 3698900 51755392 ~ 51755506 (-) True XLOC_011087

Expression Profile

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