RNA id: TCONS_00021608


Basic Information

Item Value
RNA id TCONS_00021608
length 1314
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_011082
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51244297 ~ 51254694 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTCTCTGTCTGCAGCAAACACACAGTTTTCCCTCAACCTGTTCAAGAAGATCAGCGGAGGAAACGCATCAGGAAATGTGTTTTATTCTCCTGTCAGCATCTCCTCGGCTCTGGCCATGGTGTCGCTCGGTGCCAAAGGAAACACCGCAGATCAGATGTTTAAGGTCTTGGGATTTAACAATCTTCCCAAATCAGCCGGTGCGACTCCAGAAGCTCATCAATCGATGATGCAACAAGCCCAAAAGCCCAAGAGTGGAGTCAAGGATCAACATGGACAAGCAATGATGCAACAAACACAGAAGATTGATATACCTGCAGAACTCAAGAAAGGTTCTGCAGTGCCTGGACAAAAAGCTGAGGAGCAAATTCATTCAAACTTCAACAAGTTTATGAGTGAACTGAACAAACCAGGAGCCCCGTATGTGCTGAGTCTCGCCAACCGCCTCTACGGAGAGCAGACCTACCAGTTTGTTGAGAAATTTCTCAGTGATGCAAAAAGATACTATGAAGCCGGACTGGAGAAGGTGGACTTCAAGAATAAATCAGAAGCTGCACGTGTCAACATCAACACATGGGTGGAGAAAAACACACAAGAGAAGATCAAGGATTTGCTGCCGTCAGGAGCCATTGATGCAATGACAAGACTGGTTTTGGTGAACGCCATCTACTTCAAGGGGAACTGGGAGAGGAAATTCCCAAAAGAAGCCACCAATGATGGGCAGTTCAAGCTGAATAAGAATCAAACTAAACCAGTGAAGATGATGTATCAGAAAGCTCATTTTCCACTAGCTTCAATCCCAGAGATGAACAGTCAGGTTCTGGAGCTGCCTTATGTGGGGAAGAATCTCAGTATGTTGATCATCCTTCCTGATCAGATTGAAGACGCAACCACTGGCCTTGAGAAGCTTGAGAAGGCACTGACCTACGAGAAGCTCATGGAGTGGACCAAACCGGAAGTGATGCGTCAACAGGAGGTTCAAGTCTCTCTGCCTAAATTCAAGATGGAGCAAACCTACGACATGAAGAGTCTTCTGGTCAGCATGGGGATGGAGGATGTGTTTGACCCACAGAAGGTTAATCTAACAGGCATGTCCTCCAGCAATGACCTGGTGCTGTCCAAGGTCATTCATAAAGCCTTTGTTGAAGTCAATGAAGAAGGAACCGAAGCGGCTGCAGCCACCGGTGCCATAATGATGCTTCGGTGCATAAGACTCCCACAGTCCTTTAATGCAGATCATCCGTTCCTTTTCTTCATCCGACACAATCCCACCAAGAGCATTCTGTTTTACGGACGCTTCTGCTCTCCATAA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-148 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 91 and peeling skin syndrome. Orthologous to several human genes including SERPINB6 (serpin family B member 6) and SERPINB8 (serpin family B member 8).

Ensembl:

ensembl_id ENSDART00000050644

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022272 lncRNA downstream 164262 51078667 ~ 51080430 (-) False XLOC_011080
TCONS_00022273 lncRNA downstream 164262 51078915 ~ 51080430 (-) True XLOC_011080
TCONS_00022271 lncRNA downstream 2007591 49236408 ~ 49237101 (-) True XLOC_011064
TCONS_00022270 lncRNA downstream 2022599 49215478 ~ 49222093 (-) True XLOC_011063
TCONS_00022269 lncRNA downstream 2060208 49155860 ~ 49184484 (-) True XLOC_011062
TCONS_00021841 lncRNA upstream 621446 51875371 ~ 51884294 (-) False XLOC_011088
TCONS_00021842 lncRNA upstream 643831 51897756 ~ 51947869 (-) False XLOC_011089
TCONS_00021843 lncRNA upstream 1272927 52526852 ~ 52540111 (-) False XLOC_011091
TCONS_00021844 lncRNA upstream 1272947 52526872 ~ 52540100 (-) False XLOC_011091
TCONS_00021845 lncRNA upstream 1280592 52534517 ~ 52540136 (-) False XLOC_011091
TCONS_00021606 mRNA downstream 92699 51084472 ~ 51151993 (-) True XLOC_011081
TCONS_00021605 mRNA downstream 172286 51001957 ~ 51072406 (-) True XLOC_011079
TCONS_00021602 mRNA downstream 292426 50926455 ~ 50952266 (-) True XLOC_011076
TCONS_00021601 mRNA downstream 325784 50917913 ~ 50918908 (-) True XLOC_011075
TCONS_00021600 mRNA downstream 346805 50889118 ~ 50897887 (-) True XLOC_011074
TCONS_00021609 mRNA upstream 12577 51266502 ~ 51271962 (-) False XLOC_011083
TCONS_00021610 mRNA upstream 12651 51266576 ~ 51272006 (-) True XLOC_011083
TCONS_00021611 mRNA upstream 28034 51281959 ~ 51288178 (-) True XLOC_011084
TCONS_00021612 mRNA upstream 38699 51292624 ~ 51299061 (-) True XLOC_011085
TCONS_00021613 mRNA upstream 116181 51370106 ~ 51407525 (-) True XLOC_011086
TCONS_00021604 other downstream 283330 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 309386 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 605906 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021592 other downstream 1249098 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021580 other downstream 3301435 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021614 other upstream 501467 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021617 other upstream 687905 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021634 other upstream 2388895 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 2396977 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 3511576 54765501 ~ 54767193 (-) True XLOC_011121

Expression Profile

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