RNA id: TCONS_00021609


Basic Information

Item Value
RNA id TCONS_00021609
length 1453
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_011083
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51266502 ~ 51272006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGAGGTTTAGAGGATCGGCATTTCAGGGCGAGGCAACATCTTGTGAAAATGGAGTCTCTGTCTGCAGCAAACACACAGTTTTCCCTCAACCTGTTCAAGAAGATCAGCGGAGGAAACGCATCAGGAAATGTGTTTTATTCTCCTGTCAGCATCTCCTCGGCTCTGGCCATGGTGTCGCTCGGTGCCAAAGGAAACACCGCAGATCAGATGTTTAAGgtGTTGGGATTTAACAGTCAAGCTCATCAACCAGTGGAGCAGATTCACTCAAACTTCAAAAAGTTTATGAGTGAACTGAACAAACCAGAAGCCCCGTATGTGCTGAGTCTTGCCAACCGCCTCTACGGAGAGCAAACCTACCAGTTAATTGAGAAATTCCTCAATGACACAAAAAGATACTATGACGCCGGACTGGAGAAGGTGGACTTCATAAATAAATCAGAGGACGCACGTGTCAACATCAACACATGGGTGGAGAAAAACACACAAGAGAAGATCAAGGATTTGCTGCCATCAGGAGCCATTGATGCAATGACGAGACTGGTTTTGGTGAACGCCATCTACTTCAAGGGGAATTGGGAGGAAAAATTCCCAAAGGAAGCCACTAGAGATGGCGTGTTTAGGCTGAACAAGAATCAAACTAAACCAGTGAAGATGATGCATCAGAAAGCAGAGTTTCCAAGTGGCTACATCGAAGAAATGAAGAGTCATGTTCTGGAGCTGCCGTATGCAGGGAAGAATCTCAGTATGTTGATCATCCTTCCTGATGAGATTGAAGACGAAACCACCGGCCTTCAGAAGCTTGAGAGGGCACTGACCTATGAGAAGCTCATGGAGTGGACCAAACCAGAAGTGATGCATCAACGGGAAGTTCAAGTCTCTCTGCCCAAATTCAAGACGGAGCAAACCTACGACATGAAGAGTCTTCTGGTCAGCATGGGGATGGAGGATGTGTTTGACCCACAGAAGGTTAATCTAACAGGCATGTCCTCCAGCAATGACCTGGTGCTGTCCAAGGCCATTCATAAAGCCTTTGTTGAGGTCAACGAAGAAGGAACCGAAGCGGCTGCGGCCACTGCTGCCATCGAGAAGTTAATGTGCTACATCCCGCCACTGTCTTTTAATGCAGATCATCCGTTCCTTTTCTTCATCCGACACAATCCCACCAAGAGCATTCTGTTTTATGGACGCTTATGTTCTCCTTAGAGATGCTAATGTTGCTGTGATGATAACTGATGCCTGTGTTTCTATTATGATCAAATCCTCTACAAAAAACTGAGTGTGCGTCtggattttttttgcagtgagcgTATTACTCAGCTTTTACAGCACAGAATGAGAAAGACATGTTgctacacactcattcagaaCGATCGCTTCAGTCGACACCGAAACTTCCAGTGCAATGTATGTGGAAACTGAGaaaattactaataaaaattGATGTCACCATG

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040715-5 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in peeling skin syndrome. Orthologous to several human genes including SERPINB8 (serpin family B member 8).

Ensembl:

ensembl_id ENSDART00000164021

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022272 lncRNA downstream 186072 51078667 ~ 51080430 (-) False XLOC_011080
TCONS_00022273 lncRNA downstream 186072 51078915 ~ 51080430 (-) True XLOC_011080
TCONS_00022271 lncRNA downstream 2029401 49236408 ~ 49237101 (-) True XLOC_011064
TCONS_00022270 lncRNA downstream 2044409 49215478 ~ 49222093 (-) True XLOC_011063
TCONS_00022269 lncRNA downstream 2082018 49155860 ~ 49184484 (-) True XLOC_011062
TCONS_00021841 lncRNA upstream 603409 51875371 ~ 51884294 (-) False XLOC_011088
TCONS_00021842 lncRNA upstream 625794 51897756 ~ 51947869 (-) False XLOC_011089
TCONS_00021843 lncRNA upstream 1254890 52526852 ~ 52540111 (-) False XLOC_011091
TCONS_00021844 lncRNA upstream 1254910 52526872 ~ 52540100 (-) False XLOC_011091
TCONS_00021845 lncRNA upstream 1262555 52534517 ~ 52540136 (-) False XLOC_011091
TCONS_00021607 mRNA downstream 11808 51244297 ~ 51254694 (-) False XLOC_011082
TCONS_00021608 mRNA downstream 12577 51244692 ~ 51253925 (-) True XLOC_011082
TCONS_00021606 mRNA downstream 114509 51084472 ~ 51151993 (-) True XLOC_011081
TCONS_00021605 mRNA downstream 194096 51001957 ~ 51072406 (-) True XLOC_011079
TCONS_00021602 mRNA downstream 314236 50926455 ~ 50952266 (-) True XLOC_011076
TCONS_00021611 mRNA upstream 9997 51281959 ~ 51288178 (-) True XLOC_011084
TCONS_00021612 mRNA upstream 20662 51292624 ~ 51299061 (-) True XLOC_011085
TCONS_00021613 mRNA upstream 98144 51370106 ~ 51407525 (-) True XLOC_011086
TCONS_00021615 mRNA upstream 611763 51883725 ~ 51888988 (-) False XLOC_011088
TCONS_00021616 mRNA upstream 613418 51885380 ~ 51889734 (-) True XLOC_011088
TCONS_00021604 other downstream 305140 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 331196 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 627716 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021592 other downstream 1270908 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021580 other downstream 3323245 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021614 other upstream 483430 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021617 other upstream 669868 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021634 other upstream 2370858 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 2378940 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 3493539 54765501 ~ 54767193 (-) True XLOC_011121

Expression Profile

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