RNA id: TCONS_00021618


Basic Information

Item Value
RNA id TCONS_00021618
length 3439
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_011090
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51950510 ~ 51966846 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCGTCACCATGATTGGCCAGACCGCGTTATTGTGCTGTAGAATCTGAAGTGACTGTTTGAGGGATTAACGGCGACAAAGGAGTCCTGTATAGGGTGGCATCATGACGACGCTGGATGATAAGATTCTAGGGGAGAAGCTGCAGTATTACTACAGCAGCAGTGAAGATGAAGAGAGCGACCATGAGGAAGACGAGAACGCACACAAAACCATCCGTGACCAGGAGGTGCTGGACGTGGAGCTCGACTACAGCGCAGATGGCAGTTCGGTCAACACTGGGCCGAAGGGAGTGATCAATGACTGGCGCAAATACAAGCAGCTGGAGAACGAGCAGCGCATCGAGCAGCAGAAAGAGATGGAGAAACTGATCAAGAAACTCAGCATGACCTGCAAATCCCATCTGGAGGAAGAAGCCGACAAGCAGAAACAGAAGGAGCTGCAGGATAAACTCACAGGCAAACTAAACCTGCGCGTggatgaggaagaggaggaggatgaCGATGATGAAGCGTTCCTCCAGCAGTATCGTCTGCAGCGGATGGAGCAGATGCGGCGGCAGCTGTGTGGAGGCAGGCGATTTGAGAAGGTGATGGACATCTCTTCGGGAGAGGAGTTTCTGCGTGCCGTCGACGAGGAGGGAAAGAGCACGCTGGTGCTGGTCCACATCTATGAGCCTGAGGTGCCCGCCTGCCAGGCCATGGACGGCAGCCTGCTCTGTCTGGCGCTGCAGTACCCGATGGTGAAGTTTTGCCGGGTGCGCGGCTCGGCTGTGGGCACGAGCGCTCTCTTCCGCAGTTCAGCTTTACCCGCACTTCTGCTTTACCGTGGTGGAGATCTGGTGGGAAATCTGGTGCGTGTGTCTGATCAGCTCGGAGACGATTTCTACGCCACAGACGTGGAAGCGCTTCTGCAGGAATATGGCCTTCTGCCAGAGAAATACGCACAGCCCAACACACACTCCTCCATTCGCAACGCCGCGGTCACACACCCCGACGATTCAGACAGCGACCTTGATATAGACTAAATGCTTGCAATCAGATCTctatacacatacatgcatacgcTGTacaaaaagcataataataataataagaggcCATCTGACAAATTCaaagtttctctggatttattggATGAGGTTTAGTAAAAggccaaaaatgtacatttattcagTGGTTATAaatagagtttctttcttctgttgaacactaaagaggatattttgaagaaagctctaaacctgtaaccattgacctccatagtaggaaaaacaaatactgttgcagtgaatggttacaggtttagagctttcttcaaaagatcttctttagtgttcaacagaaaaaagaaaggtagaagaaaaaacaaatactgtggaagtcaatggttctgtttttcctcagaaaaaaatatcttcttttgtgtttaacagaagaaagatacTCAGCTTTgagttgagtaaataatgacatcatatttaatttttgagtaaactatccctttattatctgttttattttactgACAGCATTTCtttcacatttcaaataaaaatatcgtCATTTTGAGCATTTTTTTGGTCAGATTGTCGCTCAGAATAACATATTTTGTTTGAAAACCTGGTTTAATTGATCAAATGCTGATTTCTTtactcttctgaagttaaaaaaaataatagtattggattgtttttaaaatgacgatgaaaattattaaaaatgtacaattgcaccatttttttatttattgtaaagcaATCTAAATGATACCGTTATTTCAAAGAAATGTCGTCAGtagatttcaaaataaaagaaaaattagacttaaacaaaacaaaaaaaaaagactttaatcaaaacggtcacactttaccATAAGGTTTTGTTAGTTAATATTCATCATTTTCTGATGcgttatttaaatctttatttattttagtttagattAGTTCATGCACTAGGACAGGGGTGCCCAAAAAggggtgtcctgcatattttagttccattCCCAGCTATTCCatctctttctaggtatactagaaactttcaggcaggtgtagtaaaggaagttggagctaaactattcaGCACATCGGCCCTCCTTGACTGAAAATCTAAATTCATGCTAGTTTAGATTAGTTCCGgaatgtcaaactcagtttctggagggctgcagccttGCACAGTTGTTTCAACCTGCTTTAATACGCTTgcctgtagatttcaaacaagctatttagggttggaactaaactgcaaagctgtgaccctccaggaactgagtttgacaaacTTAACTGGATTCCTTTAGGGccgtagctctgcacagttttgctccaaccctatcaaacacagctgatccaaataatcaaggtgttcaaaagagtcatgaacactTCATTAGATGGATCacctgtgtttgattagagttggagcaaaactgtacagagcttcggccctccaggaattaagtttcaGACGAATGCACTAGGACAAGGGTGCCCgaactctgtcctggaggaccggtgtccttcatattttagttttaaccCCTGTTAAATACACCTGAATGAGCTAATcaagtgtgttaaaggaagttggagctaaacaatgcaggacatcggccctctaggactgagtttgggcacctctgcacTATGAGTTAACATGACTATCAAtgaataactttattttcataacctaacattaacaaagaagAATAAATATGTTGCTTAAATGTGtctttcattgtttgttcatgataAATGAAATGGTAaaaaccaggggtgggcaaactcggtcctgtagggccggagggtctgcacagtttagctccaactgtaatcaaacacacctgcttatagatttctagcgatcttgaagacactgattggcatgttcaggtgtttttgattagagatggagctaagctatgcaggacgccggccctccagggtTTGCCCACCCCTAGTTGAACTAAttgaatcttattgtaaagtgtttttttttccatagctGGGCATTCTTATAAACATTCACAGTTGATTCAGACCCAATACAGTGACCAAACTACGGTTGCAGAAACATGTCAGATACACTAATTTACACGAGATTTCTGTACAAATGTAATGCCGCTGACGCATCAGTTACTGGACCAAAACAGTAGATATCATTcgatgtatgtatgtgtgtgtgggagtCATTTAAGACACTTCCATAATCAGGAGTGCTTCtttatgcaagaaaaaaaaaaacccttcgGAGAATCCTGCATTATTGCTTCATTATTTATTGTAGCTTTAGGATGTtgtgtttgtttacttgtgtGTTTTCATTCGGAGTACATTCACTTTAGTTCACTTTGCCCTCTGTTAGTTTTATACATTTTGTAAACGTGTCTCCATCAAAGACCAATGCAAAAATAAAAGCGTATGATTCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2365 Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway and visual perception. Is expressed in central nervous system; olfactory placode; and trigeminal placode. Orthologous to human PDCL (phosducin like).

Ensembl:

ensembl_id ENSDART00000153959

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021842 lncRNA downstream 2641 51897756 ~ 51947869 (-) False XLOC_011089
TCONS_00021841 lncRNA downstream 66216 51875371 ~ 51884294 (-) False XLOC_011088
TCONS_00022272 lncRNA downstream 870080 51078667 ~ 51080430 (-) False XLOC_011080
TCONS_00022273 lncRNA downstream 870080 51078915 ~ 51080430 (-) True XLOC_011080
TCONS_00022271 lncRNA downstream 2713409 49236408 ~ 49237101 (-) True XLOC_011064
TCONS_00021843 lncRNA upstream 560006 52526852 ~ 52540111 (-) False XLOC_011091
TCONS_00021844 lncRNA upstream 560026 52526872 ~ 52540100 (-) False XLOC_011091
TCONS_00021845 lncRNA upstream 567671 52534517 ~ 52540136 (-) False XLOC_011091
TCONS_00021846 lncRNA upstream 590182 52557028 ~ 52562908 (-) True XLOC_011092
TCONS_00021847 lncRNA upstream 717912 52684758 ~ 52686317 (-) False XLOC_011093
TCONS_00021616 mRNA downstream 60776 51885380 ~ 51889734 (-) True XLOC_011088
TCONS_00021615 mRNA downstream 61522 51883725 ~ 51888988 (-) False XLOC_011088
TCONS_00021613 mRNA downstream 542985 51370106 ~ 51407525 (-) True XLOC_011086
TCONS_00021612 mRNA downstream 651449 51292624 ~ 51299061 (-) True XLOC_011085
TCONS_00021611 mRNA downstream 662332 51281959 ~ 51288178 (-) True XLOC_011084
TCONS_00021619 mRNA upstream 570153 52536999 ~ 52540056 (-) True XLOC_011091
TCONS_00021620 mRNA upstream 575704 52542550 ~ 52646789 (-) False XLOC_011092
TCONS_00021621 mRNA upstream 739213 52706059 ~ 52728159 (-) False XLOC_011094
TCONS_00021622 mRNA upstream 741184 52708030 ~ 52733436 (-) False XLOC_011094
TCONS_00021623 mRNA upstream 741346 52708192 ~ 52733384 (-) False XLOC_011094
TCONS_00021617 other downstream 2729 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 195004 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 989148 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 1015204 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 1311724 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021634 other upstream 1675974 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 1684056 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 2798655 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 2818891 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000187_00011583_00015125.mRNA True 2701 mRNA 0.42 4 CI01000187 10273 ~ 15592 (+)