RNA id: TCONS_00021624


Basic Information

Item Value
RNA id TCONS_00021624
length 647
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_011094
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52706059 ~ 52736549 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgactagtgtacagcttcaagtgacatttaaaggttaattagggtgaagttagggtaattaggcaagtcattgtataacagtggtttgttctgtagacaatccaaaacaaatattgcttaagggggctaataaaagtgctttaaaacaattaaaatctcctttttttctagccgaaataaacaagtaagactttttttcagaagaaaaaatattataggaaatactgtgaaaaattcctaaatctgttcaacatcatttgggaaatatttttaaaacaacataattcacaggagggcataATAATTGtggctttaactgtatatcatCATATTGCACAGCTCAGTACTGAAGTATTGTCTTTGTTGGTTTTTAGGCACAGAAAAGTGCGTTTTTTGCTGCTGATCTGGGGGTGATCGTGCAGCAGCAGGCTCGCTGGAGAAATAAAATGGACCAAATTCGGCCTTTCTACACCGTTAAGAGCAACAGCAGCCCTGTAGTTGTTGAACTGCTGGCTTCTCTCGGAACTGGCTTCATTTGTTCAAACAAgCATGAGCTGGACTTGGTTAAGGGCTTTGGCGTCTCATCTCAGGACATTATTCTGGGCGGCACGTGCAAACAGCTCTCCCATATCAAATATGCAGCCAAA

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0033387 putrescine biosynthetic process from ornithine biological_process
GO:0042177 negative regulation of protein catabolic process biological_process
GO:1902269 positive regulation of polyamine transmembrane transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0042978 ornithine decarboxylase activator activity molecular_function
GO:0004586 ornithine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-20 Predicted to enable ornithine decarboxylase activator activity and ornithine decarboxylase activity. Predicted to be involved in negative regulation of protein catabolic process; positive regulation of polyamine transmembrane transport; and putrescine biosynthetic process from ornithine. Predicted to act upstream of or within polyamine biosynthetic process. Predicted to be active in cytoplasm. Is expressed in hindbrain neural plate; immature eye; nervous system; and notochord. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma; hepatocellular carcinoma; and liver cirrhosis. Orthologous to human AZIN1 (antizyme inhibitor 1).

Ensembl:

ensembl_id ENSDART00000135718

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021848 lncRNA downstream 36135 52685610 ~ 52688445 (-) True XLOC_011093
TCONS_00021847 lncRNA downstream 38263 52684758 ~ 52686317 (-) False XLOC_011093
TCONS_00021846 lncRNA downstream 161672 52557028 ~ 52562908 (-) True XLOC_011092
TCONS_00021845 lncRNA downstream 184444 52534517 ~ 52540136 (-) False XLOC_011091
TCONS_00021843 lncRNA downstream 184469 52526852 ~ 52540111 (-) False XLOC_011091
TCONS_00021632 lncRNA upstream 522579 53247940 ~ 53254782 (-) True XLOC_011099
TCONS_00022274 lncRNA upstream 749097 53474458 ~ 53480969 (-) False XLOC_011100
TCONS_00022275 lncRNA upstream 749097 53474458 ~ 53481166 (-) False XLOC_011100
TCONS_00022276 lncRNA upstream 749097 53474458 ~ 53481183 (-) False XLOC_011100
TCONS_00022279 lncRNA upstream 749097 53474458 ~ 53481233 (-) False XLOC_011100
TCONS_00021620 mRNA downstream 77791 52542550 ~ 52646789 (-) False XLOC_011092
TCONS_00021619 mRNA downstream 184524 52536999 ~ 52540056 (-) True XLOC_011091
TCONS_00021618 mRNA downstream 757734 51950510 ~ 51966846 (-) True XLOC_011090
TCONS_00021616 mRNA downstream 834846 51885380 ~ 51889734 (-) True XLOC_011088
TCONS_00021615 mRNA downstream 835592 51883725 ~ 51888988 (-) False XLOC_011088
TCONS_00021626 mRNA upstream 61283 52786644 ~ 52821023 (-) True XLOC_011095
TCONS_00021627 mRNA upstream 149732 52875093 ~ 52879741 (-) True XLOC_011096
TCONS_00021628 mRNA upstream 176129 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021629 mRNA upstream 200778 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA upstream 229430 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021617 other downstream 776799 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 969074 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 1763218 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 1789274 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 2085794 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021634 other upstream 917459 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 925541 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 2040140 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 2060376 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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